Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1529 ATGCAAGATAATATGAAGAAGCAGAAGCAGAAGCAGGTAGTGGTGGTGGCCAATAATGAAGAATCTAATAAGAAGAAGGAGCATCGCATTGTTATGTGGACTCAAGAGGAGGATGATATTCTGAGGGAGCAGGTTGGAATCCATGGAACTGAAAATTGGGGTATTATTGCTTCTAAATTCAAGGATAAAACTACAAGACAGTGCAGAAGGAGATGGTTCACTTACTTGAATTCTGATTTCAAGAAAGGGGGTTGGTCACCGGAGGAAGATATGCTCTTGTGCGAGGCTCAGAAACTATTGGGTAACCGGTGGACAGAAATATCAAAGGTGGTTCCAGGCAGAACGGATAATGCTGTTAAGAACCGGTTCTCCACATTGCGCAAAAAGAGAGCGAAATATGAAGCATTAGCAAAAGAGAACCACACTTCTTACACCAATTCAAATAATAAGAGGGTTATTCTACAACATGGACATGTTACAGATTCAGCATCAGAATCTGGTGTGTCTACTAAGAAGATGAGGAGGCCGCATATTCCAGTGGTAGAAGAAAGGATAAACTATGGAGACAGATTACATAAACAAAATGGAACTCAGATAAGTCAGCAGCCAAGAGCGCCATTCGCCGTACTACCTCAGAACTCTCATAATGTCAACAACTTATCAGATCAGCATGATATCTGCAGTTTGAAGTTTAATGGTTATGGCCAAAACAAGTTGCAAGGGACATTCCTCAAAAAGGACGATCCAAAGATAAACGCATTGATGCAACAAGCAGAGTTCCTAAGTTCATTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTAGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAGACGAACCAAAGAGTCTGATGGTCCGAGATGTAAGGTTCCGGATCTACAGCTTGTAGATCTAGGAGATTGGTTGGAGGACTTGAAGAGTAACAGTGAGGGAATTCAACCATGTTGGAGGAAATTTAAATCCATTCAAAACACAAAGTTCTATGAGGACTATAGTTTCGGATTGTATTCTAGGCAAATGGAATTATATGAAGACTCTCCTGGCAGTTCTGAGTACAGCACAGGATCAACTCTCCTCCCTCATTTGGGTGCCGACAACTCGGAACACTCGCTGCATCAGGAAATTGAAACTGAACTCAAGTCAATACACATTGGAGATCAAAAGGAATGTGAGCAAGGTGTTCTTTCTACTGCAACTTTGGATCAAGATGTTTTCGCATTAAATAAGGATCGGATGAACAAAGATGGCATTGTTTCTGCCTCATCAATGACAGAGTTCAGTTCCCCTCCTCAAGTTACACCTCTGTTCAGATCCTTGGCTGCAGGAATTCCTAGCCCTCAATTTTCCGAAAGCGAGAGGAACTTTCTCATGAAAACACTTGGAATGGAATCTCCATCCCTCAACAACATAAGCTTAAACCCCTCGCAACCACCACTCTGCAAAAGAGCCCTGCTACAAAGCCTATAA 1500 0.4193 MQDNMKKQKQKQVVVVANNEESNKKKEHRIVMWTQEEDDILREQVGIHGTENWGIIASKFKDKTTRQCRRRWFTYLNSDFKKGGWSPEEDMLLCEAQKLLGNRWTEISKVVPGRTDNAVKNRFSTLRKKRAKYEALAKENHTSYTNSNNKRVILQHGHVTDSASESGVSTKKMRRPHIPVVEERINYGDRLHKQNGTQISQQPRAPFAVLPQNSHNVNNLSDQHDICSLKFNGYGQNKLQGTFLKKDDPKINALMQQAEFLSSLALKVDAENMDQSLENAWKVLQEFLRRTKESDGPRCKVPDLQLVDLGDWLEDLKSNSEGIQPCWRKFKSIQNTKFYEDYSFGLYSRQMELYEDSPGSSEYSTGSTLLPHLGADNSEHSLHQEIETELKSIHIGDQKECEQGVLSTATLDQDVFALNKDRMNKDGIVSASSMTEFSSPPQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNNISLNPSQPPLCKRALLQSL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1529 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Amo05g1529 499 CDD SANT 33 76 IPR001005 -
Amo05g1529 499 CDD SANT 85 126 IPR001005 -
Amo05g1529 499 PANTHER MYB PROTEIN-RELATED 11 496 - -
Amo05g1529 499 SUPERFAMILY Homeodomain-like 31 123 IPR009057 -
Amo05g1529 499 PANTHER TRANSCRIPTION FACTOR MYB88 11 496 - -
Amo05g1529 499 Coils Coil 492 499 - -
Amo05g1529 499 Gene3D - 19 81 - -
Amo05g1529 499 ProSiteProfiles Myb-like domain profile. 33 76 IPR001005 -
Amo05g1529 499 Gene3D - 83 155 - -
Amo05g1529 499 Pfam Myb-like DNA-binding domain 33 93 - -
Amo05g1529 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 76 IPR017930 -
Amo05g1529 499 SMART sant 81 129 IPR001005 -
Amo05g1529 499 SMART sant 29 78 IPR001005 -
Amo05g1529 499 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1529 Amo-Chr5 25639723 25645585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1529 1 328 MYB Transcription Factor Family AT2G02820 55.422 2.38e-120 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g1529 Myb_DNA-bind_6 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1529 K09422 - gmx:100807667 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1529 05 25639723 25645585 Amo15g0368 15 15782731 15788064 hybridization
Amo05g1529 05 25639723 25645585 Amo15g0368 15 15782731 15788064 PCT