Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1527 CTGCTCCAGCGACTGCTCCGTCGACGATCTGCTCCAGTGACTGCTCCGGCGACGATCTGCTTAGCAGAGTTATCCTCCGACGAGATTGTGTGCTCTCTTCAGAGAAGATCTCCTCTCCTCCAACGGCGGTTCTCCTCCGGCAACAATCTCCGTAAGAGAGCAAGAAACTTCATAAAACTATATGAGATCTGTTGCGCGTTTCCTCCCACGATCTTCTCCTACGGCGATCTTCTCCATCAACGCTTCTCTTCCATGAGATCTGTTGCGCAAGTGTTTCCTGTGGCATCGAGTTGTATTCTACGGCTTTTCCATCTCTATCGAGCTTCGTTGAGCATCTGGGTTTTCGATTTTCTTCCTTGTCAGAAGAAATTAGAGCAATTGGACCCTGCTCCTAAGTCTGAGGATCGCCCTGCTAAACGCTCTAGGCTCAAGTCCCCCAGAGACACTGACTCCGCCGCACTGGAAATCTCCAAGGAGGAACTTGACTTCAGGAATCTTCTTGAAAAAGAGCTCGAGAAATTCAATAACTTCTTCGTCGAGAAGGAGGAAGAGTACATTATCAGACTCAAGGAGCTTCAGGACAGGGTGGCCAAGGTGAATGTTTCCAGTGAAGAGTTGATGAAAATTCGCAAGGAAATTGGTGCACTTCATGTATCATTGGTGGAAGCAGTTAGGCCTTACACGATCTTGCGCACTAGTCCATACTGCAAGAGGATATTCTCTAGAAGCCTACTTAAGAATGATGACACAAATATATGCTTTAGGGGATTCTGGTCCATCTTATCTTGTGTGGCTGCTCTTGTTCCTAAAGGGGAGCTTGATGGTGAAATAGGGGATGCACACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCCCTTCAGAAATTAAGCCATTCCTTGTCAGTTTCTCAATGTATGTTGATTTTTATAAACCAGCAACTTAGCCAATACAGAACTTGTTTTGGGGGGTTTAGGGTCACGACTTCTGTGGGCAAAAAAAGAGAAGGAAAAGGCACCAAACACCTTGCAACTGAGAAACAAAGAAGAGAACAACTGAATGGCAAATACAAAATCCTGAGGAGTCTTATCCCAAGCCCCACAAAGATGGATAGAGCCTCTGTGGTGGGTGATGTCAATGAATACATAAGGGAGCTGCTCAAAATGAAAGCGAAAGATGATGCTACAGAGAGCTGTAACATAAAGTCTTTCAGCAATCCAGATAGATGCATAAGGACCTCATGGCTTCAAAGGAAATTGAAAGATAGCGAGGTTGATGTGCAGATTGCTGATGATGATGTTACAATCAAACTCTTCCAGAGGAAGAAGATTAACTGTCTGCTTTCAGTCGCTAAGTTTCTGGATGAACTTCAGTTGGAACTTCACCATGTTGCAGGTGGACATATAATAGAAGGTTCTTCAGTCTATGCGAGGGCTATAGCCAACAGTGTGATTGATGTTATGGACACTCAGTATGCAGCAGCAGTTCCACATACAGGTAGCTATTAG 1506 0.4529 LLQRLLRRRSAPVTAPATICLAELSSDEIVCSLQRRSPLLQRRFSSGNNLRKRARNFIKLYEICCAFPPTIFSYGDLLHQRFSSMRSVAQVFPVASSCILRLFHLYRASLSIWVFDFLPCQKKLEQLDPAPKSEDRPAKRSRLKSPRDTDSAALEISKEELDFRNLLEKELEKFNNFFVEKEEEYIIRLKELQDRVAKVNVSSEELMKIRKEIGALHVSLVEAVRPYTILRTSPYCKRIFSRSLLKNDDTNICFRGFWSILSCVAALVPKGELDGEIGDAHMAMQARLMSQALQKLSHSLSVSQCMLIFINQQLSQYRTCFGGFRVTTSVGKKREGKGTKHLATEKQRREQLNGKYKILRSLIPSPTKMDRASVVGDVNEYIRELLKMKAKDDATESCNIKSFSNPDRCIRTSWLQRKLKDSEVDVQIADDDVTIKLFQRKKINCLLSVAKFLDELQLELHHVAGGHIIEGSSVYARAIANSVIDVMDTQYAAAVPHTGSY* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1527 501 SMART finulus 342 391 IPR011598 GO:0046983
Amo05g1527 501 Gene3D - 348 425 IPR036638 GO:0046983
Amo05g1527 501 PANTHER TRANSCRIPTION FACTOR BHLH91 327 387 - -
Amo05g1527 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 392 IPR036638 GO:0046983
Amo05g1527 501 Pfam Helix-loop-helix DNA-binding domain 339 385 IPR011598 GO:0046983
Amo05g1527 501 Pfam recA bacterial DNA recombination protein 260 327 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo05g1527 501 Pfam SPX domain 129 199 IPR004331 -
Amo05g1527 501 PRINTS RecA protein signature 284 313 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo05g1527 501 PRINTS RecA protein signature 246 275 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo05g1527 501 Gene3D - 259 347 IPR027417 -
Amo05g1527 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Amo05g1527 501 PANTHER TRANSCRIPTION FACTOR BHLH91 327 387 IPR045895 GO:0006355|GO:0048658
Amo05g1527 501 Coils Coil 164 184 - -
Amo05g1527 501 PANTHER TRANSCRIPTION FACTOR BHLH91 389 497 - -
Amo05g1527 501 PANTHER TRANSCRIPTION FACTOR BHLH91 389 497 IPR045895 GO:0006355|GO:0048658
Amo05g1527 501 MobiDBLite consensus disorder prediction 128 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1527 Amo-Chr5 25460684 25465942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1527 331 499 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 39.381 6.93e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g1527 RecA 2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1527 - - gmx:100801349 261.922