Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1500 ATGGCTTTCTTACCAGCAAATTTCATGCTACAAACCCCTCACCACCATGATGATCACCACCACCAACAACATCATCCACCTTCCCTCAATTCAATCCTACCAACATGCTCACCCCATGATTATCATGGAGGGGGAGCAGCAACATTTCTAGGGAAAAGATCCATGTCATTCTCGGGGATTGATCTTGGAGGAGTAGAAGAAGGTAACAACAATGGGGATGAAGAATTATCAGATGATGGATCACAGATAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGGCACTTGAGAAGAGCTTTGAGTTAGGGAACAAGCTTGAACCTGAGAGAAAAATGCAGCTTGCAAGGTCCCTTGGCTTGCAACCAAGGCAAATTGCAATCTGGTTTCAGAATCGAAGAGCAAGGTGGAAGACTAAGCAGTTAGAGAGAGACTACGATCAACTCAAGCGTCAATTCGAAGCCGTCAAATCAGACAATGATGCACTTCACGCCCAGAACCAAAAACTTCAAGCTCAGATATTGGCACTGAAAAATAGAGAAGCAACAACAGAGTCAATAAACCTGAACAAAGACACAGAAGGATCATGCAGCAACAGAAGCGAGAACAGTTCAGAGATCAAGTTTGATATTTCGACAAGAACACCACCAACAACAACACAACAACAACAACAACCATTGTTGATAGTCCTCTATCATCAAAACCATTCTTTCCATCTTCATCATCCTCCACTAGGCCGCCACATCAGCTTTTTCAGGTTTCGAGGCCCGAGATTCATCTTCATCAGTGTCATCAACAGAATAATAATAATAATAATCATGTGGTGGCTAAAGAAGAGAGTTTGA 849 0.4311 MAFLPANFMLQTPHHHDDHHHQQHHPPSLNSILPTCSPHDYHGGGAATFLGKRSMSFSGIDLGGVEEGNNNGDEELSDDGSQIGEKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKTKQLERDYDQLKRQFEAVKSDNDALHAQNQKLQAQILALKNREATTESINLNKDTEGSCSNRSENSSEIKFDISTRTPPTTTQQQQQPLLIVLYHQNHSFHLHHPPLGRHISFFRFRGPRFIFISVINRIIIIIIMWWLKKRV* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1500 282 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Amo05g1500 282 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Amo05g1500 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 226 - -
Amo05g1500 282 SMART HOX_1 84 145 IPR001356 GO:0003677
Amo05g1500 282 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Amo05g1500 282 MobiDBLite consensus disorder prediction 61 88 - -
Amo05g1500 282 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Amo05g1500 282 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Amo05g1500 282 Gene3D - 78 149 - -
Amo05g1500 282 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Amo05g1500 282 Coils Coil 133 181 - -
Amo05g1500 282 CDD homeodomain 86 142 IPR001356 GO:0003677
Amo05g1500 282 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Amo05g1500 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 226 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1500 Amo-Chr5 22333799 22335940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1500 1 217 Homeobox Transcription Factor Family AT1G69780 69.545 8.35e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g1500 Homeodomain 8.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1500 K09338 - gmx:100808033 315.464