Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1488 ATGAATTATAACTGGAGTGAGATGCATGCAGAAATATGCAAAATAGGAAGCGATGATGAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTACCCAACAGGGACTCGCACCAATAGAGCTACAAAGGCAGGATTCTGGAAAGCCACGGGAAGAGACAAAGCCATATACTCAAGCTCAAGCCATTGCCTCGTTGGTATGAGAAAGACTCTTGTGTTCTACAAAGGACGAGCTCCCAATGGCCTCAAATCAAACTGGATCATGCACGAGTATCGTCTTGACTCCAATCAGGAAGATGGCTGGGTTGTGTGCAGAGTCTTCAAGAAGCGGATGCCCACGCTACGCAACGTGGTAGACTATGATGATCAACTTCCCTTCATGCAAGGATCTCCATCCACTCACTATCCCTGCAAGCACGACCTTCATCAATTCCAATACAACACCAATGATGCTTTTCTCCAACTTCCACACCTTGAGAGCCCTAATCAAGTTTTGAGTTGCGGCAGCCCCGTTATTGCACCCTATGCCTACGCCGAAAACAACAACAACAATAATGGAACTTTGCAGTCCTATTCATCTGAACGCATTCAGCAACAACTTCACTTGCTTTACGGTAGCAATATTGAGCAAGCAGTAGTGGTGGACCAAGTCACGGATTGGAGAGTGCTTGACAAATTTGTTGCTTCTCAACTCATGAGTCAAGATCAAGATCAGGCTTCCAAGGAAACCTGCAGCATGGCTGATGAACAACATGTTGCTACTACTGTGCTTCCAAATGGATCCACGAAGCAGGAAATGGCGCCTCAGGACGACTATGTTTCAACGTCTGCCTCCAGTAACTGCGATATTCACCTGTGGAATTGA 867 0.4556 MNYNWSEMHAEICKIGSDDENEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSSSSHCLVGMRKTLVFYKGRAPNGLKSNWIMHEYRLDSNQEDGWVVCRVFKKRMPTLRNVVDYDDQLPFMQGSPSTHYPCKHDLHQFQYNTNDAFLQLPHLESPNQVLSCGSPVIAPYAYAENNNNNNGTLQSYSSERIQQQLHLLYGSNIEQAVVVDQVTDWRVLDKFVASQLMSQDQDQASKETCSMADEQHVATTVLPNGSTKQEMAPQDDYVSTSASSNCDIHLWN* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1488 288 SUPERFAMILY NAC domain 18 110 IPR036093 GO:0003677|GO:0006355
Amo05g1488 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 11 274 - -
Amo05g1488 288 Pfam No apical meristem (NAM) protein 17 94 IPR003441 GO:0003677|GO:0006355
Amo05g1488 288 ProSiteProfiles NAC domain profile. 1 110 IPR003441 GO:0003677|GO:0006355
Amo05g1488 288 Gene3D NAC domain 5 113 IPR036093 GO:0003677|GO:0006355
Amo05g1488 288 MobiDBLite consensus disorder prediction 260 288 - -
Amo05g1488 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1488 Amo-Chr5 21600640 21603151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1488 11 287 NAC Transcription Factor Family AT1G12260 45.695 2.35e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g1488 NAM 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1488 - - ahf:112800892 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1488 05 21600640 21603151 Amo01g1811 01 46611245 46613771 PCT
Amo01g1811 01 46611245 46613771 Amo05g1488 05 21600640 21603151 PCT