Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1486 ATGGAGAATAGTGGTGAAATGATCAAGAAAACTAAAGGGAGACAAAAGAGAGATATAAAGAGGATTGAGAATAAGAAAAATTGTCAAATCGCTTTTACAAAGAAAAAAGACTACTTACGAAAAAAGGCGAATGAAATAAAATCTTTATGTGATGCTAGTGTTGATTTGAGCTTATATTCTTCAAGTGAAAAAGCCTATTACTATGACGATTCTTCGTTAAAGAGAATAAAAAAAGCTCTCTCAAACGGACAACAATCTCAAAGTAGTAATCAGTTCTTTGGTTACATCATCGAGGAAATGTCTAGGATGGACATGCCGAATCTCGTTAAAAAGAAC 336 0.3274 MENSGEMIKKTKGRQKRDIKRIENKKNCQIAFTKKKDYLRKKANEIKSLCDASVDLSLYSSSEKAYYYDDSSLKRIKKALSNGQQSQSSNQFFGYIIEEMSRMDMPNLVKKN 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1486 112 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Amo05g1486 112 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Amo05g1486 112 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Amo05g1486 112 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Amo05g1486 112 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Amo05g1486 112 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 88 - -
Amo05g1486 112 SUPERFAMILY SRF-like 13 82 IPR036879 GO:0003677|GO:0046983
Amo05g1486 112 PANTHER OS12G0407400 PROTEIN 10 88 - -
Amo05g1486 112 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Amo05g1486 112 Gene3D - 24 103 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1486 Amo-Chr5 21538086 21554136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1486 13 83 MADS-box Gene Family AT2G42830 44.000 1.39e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo05g1486 SRF-TF 3.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1486 K09264 - ahf:112701097 171.014