Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1478 ATGGGGAGACAACCATGCTGTGACAAAGTTGGGGTGAAGAAAGGTCCATGGACAAGTGAAGAAGATAAGAAGCTTATGAACTTCATCATGAGCAACGGACAGTGCTGTTGGAGAACTGTGCCTAAGCTTGCAGGCCTTAAGCGTTGTGGAAAGAGCTGCCGTCTTCGTTGGACCAATTATCTTCGCCCTGACTTGAAGAGAGGCCTCCTCACTCATTCTGAGGAGCAACTTGTCATCGATCTCCATGCTCGTCTTGGCAACAGGTGGTCTAAGATAGCTTCAAGGTTACCAGGGAGGACAGATAATGAGATTAAGAATCATTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATTGACCCTGTTACTCATGAACCTCTTGCTAAGCAACAGCTAGTTTCATCATCATCATCTTCATCCGAATCAGCAGAGCAATTGCCAGAACCTCAACAACAGCTCAAGGAAAGTGTTGTTAACAACAACGATAATAATGGGGTACCGGTTCCCATCAATTCACAGCAGGAGAACTCGTCGAGTTCGTCACCACCAACTGAAAACTCTTGTTCTGCATCGGGGGATGGGGATGAATCTCTAATATTGAACAGCTTGTGGCTTGATGATACTCCACTCATTGATGCATTATGGGATACTACTCCTACATCTTGGTTATTGGACTGTCAAGACTTTGGCATTCATGACTTTGGTTTTAACTGTTTCAATGAGACTCAGTCAAATGCTCCCCAAACTCTGGAAACAGAGGAAACAAAATGGCATTAG 783 0.4444 MGRQPCCDKVGVKKGPWTSEEDKKLMNFIMSNGQCCWRTVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTHSEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLAKQQLVSSSSSSSESAEQLPEPQQQLKESVVNNNDNNGVPVPINSQQENSSSSSPPTENSCSASGDGDESLILNSLWLDDTPLIDALWDTTPTSWLLDCQDFGIHDFGFNCFNETQSNAPQTLETEETKWH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1478 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo05g1478 260 Gene3D - 70 153 - -
Amo05g1478 260 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo05g1478 260 CDD SANT 16 61 IPR001005 -
Amo05g1478 260 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 225 - -
Amo05g1478 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo05g1478 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo05g1478 260 Gene3D - 12 67 - -
Amo05g1478 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 1 225 - -
Amo05g1478 260 CDD SANT 71 112 IPR001005 -
Amo05g1478 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo05g1478 260 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Amo05g1478 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo05g1478 260 SMART sant 66 114 IPR001005 -
Amo05g1478 260 SMART sant 13 63 IPR001005 -
Amo05g1478 260 MobiDBLite consensus disorder prediction 131 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1478 Amo-Chr5 21409599 21411066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1478 1 238 MYB Transcription Factor Family AT4G22680 54.074 1.62e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g1478 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1478 K09422 - gmx:100786965 351.288