Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1476 ATGAATTCCCTTGGTTTCCTTCTTTCATTGCTTGTTCTGGTTGCATTTTCCATTGTGCAGCTGGTTCATGGAAATGCAGAACTGAGAGCTCTTATGGACTTGAAATCCTCARTAGACCCGGAGGGAAAGATCCTTAGCTCTTGGAGCAGTGATGGTGATCCATGCAGTGGCTTGTTCCAAGGTGTTGCGTGCAATGAGCACCGCAAAGTGGCCAACATTTCCTTGCAGGGAAAGGGACTTTCAGGGTGGTTATCTCCTTCTGTGGCTGAACTTAAATGCTTGTCAGGTTTATACCTTCATTACAACAACCTTTCTGGTGAGATACCCCCACAYATTTCAAATCTTACTGAACTTGTTGATCTCTATCTCGACGTGAATAGTCTCTCCGGAACCATACCTACTGAGATCGGCAACATGGCTAGTCTCCAAGTGGTGCAGTTAGGAGACAACCAATTAGTGGGAAGTATACCTAAACAGATGGGCTCCTTGAAGCAGCTTAGTACTCTTGCATTGCAATATAACAAATTAAGTGGCGAAATTCCACTAAGCTTGGGAAACTTGGAAAAGCTAAGCAGGCTGAATTTGAGCTTTAACAACTTCACTGGTATGATTCCTGCAACATTAGCTCATCTTGAACAACTCAAGGTTCTAGACATTCAAAACAATTCTCTATCAGGGTTTGTTCCTTCAGGATTGAAGAGACTGGGGGATGGATTCCAAGGTGCAAACAACCGAGGTCTATGTGGAGTTGGGTTTTCTACTCTGAGAGCATGCAACAAAGATCAAGACATGAAAGTTAACCATATTGATGACACAGACCAAGATCTACCCAAAAATGATGATACTGAAAACGCTCTTCCAGAGCCTGCGAATGTGAAATTGAATTGTAACCAGACTCATTGCTCAAAATCAAGGAGGTTTCCTCAGGCTGTGATCACAGCAGGTCTTGTGACAATCACACTCACATTCTTCAGCGTTGGATTTCTTACTTTTGTCAAATACCGACGGCAAAAGCAGAGGATTAGGAATACATCAGACTCATCTGAAGGGAAACTTAGTCCTTGCCAGCCTAAAGACTTCATCAGGAAAAGTCCATCTCCACTTGTTAACCTTGAGTATCACAATGGATGGGATCCATTGTCTAACCAAAATCTAAACCAGGTTAGATTTAATGTGGATGAGGTAGAGTCGGCAACGCTGTACTTTTCGGAAGCCAATTTATTGAGTAAGAGCAAATTCTCAGCAGTTTATAAGGGAGTACTCAGAGATGGTTCTCTTGTGGCCATTAGAAGCATTAACTCGACATGCTGCAAAACTGAGGAAGCTGAGTTTGTGAAGGGGCTGACCTTAGTAACCTCACTGAGACATGAAAACCTTGTTAGGCTCAGAGGTTTCTGCTGTTCAAGAAGTAGAGGTGAATGTTTCCTGATCTATGACTTTGCCACCAAGGGAAACCTGTCTCAATATCTTGATATGGAAGATGGAAATGGACATGTGCTTGAATGGTCCAAGAGGGTCTCCATCATCAAGGGCATTGCAAAGGGTATTGGATATTTGCACGGTGATGAAGCAAGCAAACCTTCACTAGTACATCAGAATATTTCAGTTGAAAATGTTCTCCTTGACCAGCAGTTCAATCCGTTGATCATGGATGCTGGGCTCCCCAAGCTTCTTGCAGATGACGTTGTTTTCTCAGCTCTGAAAGTAAGTGCCGCCATGGGGTACCTGGCCCCTGAATACGTTACTACAGGACGCTTCACTGAGAAGAGTGACATCTATGCATTTGGTGTCATTGTTCTTCAAGTTCTGTCTGGGAAGAAAACTGTAGGTGGTTCGATACGGTTGGCAGTTGAGTCTCTAAGATTTGATGATTTTGTTGACAGAAATCTGAGGGGAAGATACTCCAAACATGAAGCAACAATGCTTTCAAAGCTTGCAACTCTCTGCACCCATGAGCTTCCTGACCAAAGGCCAACCATGGTGGATGTGATTCAAGAGCTGAATGTGTTTCCTGCTAATTCATGA 2025 0.4336 MNSLGFLLSLLVLVAFSIVQLVHGNAELRALMDLKSSXDPEGKILSSWSSDGDPCSGLFQGVACNEHRKVANISLQGKGLSGWLSPSVAELKCLSGLYLHYNNLSGEIPPHISNLTELVDLYLDVNSLSGTIPTEIGNMASLQVVQLGDNQLVGSIPKQMGSLKQLSTLALQYNKLSGEIPLSLGNLEKLSRLNLSFNNFTGMIPATLAHLEQLKVLDIQNNSLSGFVPSGLKRLGDGFQGANNRGLCGVGFSTLRACNKDQDMKVNHIDDTDQDLPKNDDTENALPEPANVKLNCNQTHCSKSRRFPQAVITAGLVTITLTFFSVGFLTFVKYRRQKQRIRNTSDSSEGKLSPCQPKDFIRKSPSPLVNLEYHNGWDPLSNQNLNQVRFNVDEVESATLYFSEANLLSKSKFSAVYKGVLRDGSLVAIRSINSTCCKTEEAEFVKGLTLVTSLRHENLVRLRGFCCSRSRGECFLIYDFATKGNLSQYLDMEDGNGHVLEWSKRVSIIKGIAKGIGYLHGDEASKPSLVHQNISVENVLLDQQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYVTTGRFTEKSDIYAFGVIVLQVLSGKKTVGGSIRLAVESLRFDDFVDRNLRGRYSKHEATMLSKLATLCTHELPDQRPTMVDVIQELNVFPANS* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1476 674 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 669 - -
Amo05g1476 674 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 669 - -
Amo05g1476 674 SMART LRR_typ_2 91 115 IPR003591 -
Amo05g1476 674 SMART LRR_typ_2 211 234 IPR003591 -
Amo05g1476 674 SMART LRR_typ_2 139 163 IPR003591 -
Amo05g1476 674 SMART LRR_typ_2 187 210 IPR003591 -
Amo05g1476 674 Gene3D Phosphorylase Kinase; domain 1 370 480 - -
Amo05g1476 674 Gene3D Ribonuclease Inhibitor 24 173 IPR032675 -
Amo05g1476 674 Pfam Leucine rich repeat 189 234 IPR001611 GO:0005515
Amo05g1476 674 Gene3D Transferase(Phosphotransferase) domain 1 482 670 - -
Amo05g1476 674 Gene3D Ribonuclease Inhibitor 174 244 IPR032675 -
Amo05g1476 674 ProSiteProfiles Protein kinase domain profile. 402 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1476 674 SUPERFAMILY L domain-like 30 233 - -
Amo05g1476 674 Pfam Protein tyrosine and serine/threonine kinase 407 667 IPR001245 GO:0004672|GO:0006468
Amo05g1476 674 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Amo05g1476 674 SUPERFAMILY Protein kinase-like (PK-like) 377 668 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1476 Amo-Chr5 21372567 21375486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1476 1 515 Miscellaneous Gene Families AT4G22730 56.367 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Amo05g1476 PK_Tyr_Ser-Thr 4.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1476 - - gmx:100777169 1072.77