Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1447 ATGGATCCAATTACAGCACACGGCCATTCACTTCCACCACCATTCCACACAGCAAGAGATCTGTTGCACCACCACCAGCAACAGCAGCAGCAGCAGTTTCACTCCTTACAGCAGCAGCAACAAACAGAAGACGAGCAAAGCGGAAGCAGCGGAGGCCTCAACCTCGCTCACAAGAGGGAAAGAGAAGACAACAACAACAGCGATGGAAAAGACGGAACACCTGGAGGAGGAGGAGGAGGATCCGGTGAAACAGAAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAGAACAAACCCAAGCCACCGATCATCATCACCCGCGACAGTGCCAATGCCCTAAAGACGCACGTCATGGAGGTTGCAGACGGTTGCGACATCGTTGAGAGCGTCTCAAACTTCGCAAGGAGGCGCCAAAGAGGGGTTTGCATCATGAGCGGCACCGGCACCGTCACCAACGTCACACTCCGMCAACCAGCSTCCTCTGGAGCCGTCGTCTCCCTCCATGGAAGGTTCGAGATCTTGTCCCTGGCGGGATCCTTCCTCCCTCCTCCYGCTCCACCTGCGGCCTCCGGCTTGACCATATATCTAGCCGGAGGGCAAGGGCAGGTGGTCGGAGGGAGTGTGGTGGGGACACTRATTGCTTCCGGCCCGGTGGTCATCATGTCCGCTTCCTTCAGCAACGCTGCGTATGAGAGACTTCCTTTGGAGGAAGAGGACCCTTCCATGCCCTTGCAAGGTTCTGGCGGTGGCGGCGGCGGCTCAATCGGGTCCCCCGGTGGTGGTCAGCAGCATGCGCAGCAGCAGCAACAGCAGCAGATGTTAGGAGACGCAACTGCTCCACTCTTCCATGGTTTGAATCCGAATCTTCTGAATTCAGTTCAGATGCCAACGGAAGCTTTCTGGAATACTCCTGGTCGCTCTCCTTATTGA 936 0.5609 MDPITAHGHSLPPPFHTARDLLHHHQQQQQQQFHSLQQQQQTEDEQSGSSGGLNLAHKREREDNNNSDGKDGTPGGGGGGSGETEMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVSLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLIASGPVVIMSASFSNAAYERLPLEEEDPSMPLQGSGGGGGGSIGSPGGGQQHAQQQQQQQMLGDATAPLFHGLNPNLLNSVQMPTEAFWNTPGRSPY* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1447 311 PIRSF ESCAROLA 18 310 IPR014476 GO:0003680
Amo05g1447 311 Pfam Plants and Prokaryotes Conserved (PCC) domain 116 229 IPR005175 -
Amo05g1447 311 SUPERFAMILY AF0104/ALDC/Ptd012-like 112 242 - -
Amo05g1447 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 311 - -
Amo05g1447 311 MobiDBLite consensus disorder prediction 261 278 - -
Amo05g1447 311 MobiDBLite consensus disorder prediction 1 106 - -
Amo05g1447 311 Gene3D - 115 243 - -
Amo05g1447 311 MobiDBLite consensus disorder prediction 240 282 - -
Amo05g1447 311 MobiDBLite consensus disorder prediction 24 53 - -
Amo05g1447 311 CDD DUF296 116 183 IPR005175 -
Amo05g1447 311 ProSiteProfiles PPC domain profile profile. 112 249 IPR005175 -
Amo05g1447 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 311 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1447 Amo-Chr5 20720157 20722143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1447 9 306 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 61.587 2.79e-84 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1447 - - gmx:100781436 426.017