Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1439 ATGAGAAAACACCGCCAAATTAACCTCTTTCATGCTCTGTTATGCTCCATTCTCCTCTTGGTTTCTTGTGTGACGGTATCACCAGCCACTGAGAGAGAGATTCTGCAACAATTCAAGGGCAACATCACAGAGGACCCTTTCAACAGCTTGAGTTCATGGGTTTCCAGTGGAAACCCCTGCCAAGATTACAGAGGTGTTTTCTGCAACGATGAAGATTCTGTGGAAAGGATCATTCTTTGGAACACTAGCTTGGCTGGGGTGTTGTCTCCAGCATTGTCTGGTTTGAAGAGGTTGAGGACATTGACATTGTTTGGGAACCGGTTCAAGGGTAACATCCCAGATGATTATGCTGATCTTCACACATTGTGGAAGATCAATTTGAGCTCCAATGCGTTATCTGGTTCAATCCCAGAGTTCATTGGTGATTTGCCAAACATTCGGTTTCTAGATTTGTCCAAGAATGGCTTCACTGGGGAGATACCTTCAGCCTTGTTCAGGTACTGTTACAAAACCAGGTTTGTGTCTCTTTCTCATAACAACCTTGCTGGTCCAATTCCTGTGTCATTGGAGAATTGCTCCAACCTTGAAGGATTTGATCTTTCTTACAATAATCTGACCGGTGCTGTCCCTTCGCGGCTTTGTGATATTCCGAGCTTGTCATATGTGTCACTGAGAAGCAATGCCTTATCAGGGAGTGTGAAAGGTCTCATATCACCTTGCCGGAGCTTGAAACATTTGGATTTCGGTAGTAATATGTTCACAGATTTGGCTCCATTCAGCATCCTTGAAATGCAAAATCTTACTTATTTCAATATATCATATAATAGCTTTGGAGGAAATATTTCTGAGATCACAACCTGTAGTGAGAGATTAGAATTCTTTGATGGTTCCGGGAATGATTTGGATGGAGAATTTCCCTCCAGCATAATTAGATGCAAGAACCTAAAGCTCTTGGCCTTGGAGTTGAATAGACTGAAAGGGAGTATCCCAGTTGATATTCAGGAATTGCAAAAACTACTATTCATTCTTTCATGTTGCTGCAGGGACCTTTCTGGTAATAGCTTAGAGGGTGAGATTCCTCAGACCCTATACAACATGACATACTTGGAATCCCTCGACTTACATCAGAACCGGCTCAATGGAAGCATACCACCAAGCCTAGGAAACCTGTCAAGGTTGCAATACCTAGATCTGTCACATAATTCACTATCTAGTTTAATCCCATCTTCTCTTGGAAATTTAGGAAACATGACTCATTTTGATCTTTCATTCAACAATCTATCCGGTCTCATCCCTCAAATTGAAACCATACAGCGTTTTGGTCCATCTGCTTTTTCCAATAATCCTTTTCTCTGTGGTGCTCCTTTGGACACCTCTTGCTCGGCGAATGGAACTCCGTCACCTTCAGCACCTGGGAAGACTAAAGTTCTAAGCATCTCAGCAATTGTTGCGATTGTTGCTGCAGCTCTGATCCTTGCAGGGGTTTGTTTGGTAACCATCATGAATATTAGGGCTCGTCGTCGAAAAAAAGACAGTGATGAGATCATGGTTGTTGAGAGCACACCCCTTGGATCATCAACAGAATCAAATGTTATAATTGGAAAGCTGGTTCTGTTTAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACAAAAGCATTGCTTGACAAAGAGTCTATAATAGGTGGTGGATCAATTGGAACAGTGTACAGAACTGATTTTGAAGGCGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCCGAAACCAGGAAGAATTCGAGCACGAGATTGGACGATTAGGCAACCTCCAACACCCAAATTTGGTTTCTTTACAAGGTTACTATTGGTCCTCTTCAATGCAATTGATTCTATCAGAGTTTGTCCCTAATGGGAATCTCTACGATAATCTACATGGGATTGGATATCCAGGAACAAGCACTAGCAGTAGCAACAGGGAGTTATATTGGTCTAGAAGGTTCCAAATTGCACTTGGTACTGCAAGAGCACTCGCCTATCTTCACCATGACTGCAAACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCTTAGATCACAAGTATGAGGCTAAGTTGTCTGATTATGGTTTAGGAAAGTTGCTCCCCATTTTGGACAATTACGGTCTGACCAAGTTCCACAATGTAGTCGGCTATGTCGCACCAGAGTTGGCTCAAAGCCTAAGGCAGAGTGAGAAGTGTGATGTGTACAGTTTTGGGGTGATTCTTTTGGAGCTGGTTACAGGTAGGAAGCCAGTAGAAAGTCCAACAACAAGTGAGGTGGTCATCTTATGTGAATATGTAAAAAGTTTGTTAGAGGTTGGTTCAGCTTCAAATTGCTTTGACAGAAACTTATTGGGATTTGCTGAGAATGAGTTAATTCAGGTTATGAAGTTGGGACTAATTTGTACCTCGGAGGATCCATTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAGTCCATTAGAAATGGATTGGGAGCACACTAA 2541 0.4231 MRKHRQINLFHALLCSILLLVSCVTVSPATEREILQQFKGNITEDPFNSLSSWVSSGNPCQDYRGVFCNDEDSVERIILWNTSLAGVLSPALSGLKRLRTLTLFGNRFKGNIPDDYADLHTLWKINLSSNALSGSIPEFIGDLPNIRFLDLSKNGFTGEIPSALFRYCYKTRFVSLSHNNLAGPIPVSLENCSNLEGFDLSYNNLTGAVPSRLCDIPSLSYVSLRSNALSGSVKGLISPCRSLKHLDFGSNMFTDLAPFSILEMQNLTYFNISYNSFGGNISEITTCSERLEFFDGSGNDLDGEFPSSIIRCKNLKLLALELNRLKGSIPVDIQELQKLLFILSCCCRDLSGNSLEGEIPQTLYNMTYLESLDLHQNRLNGSIPPSLGNLSRLQYLDLSHNSLSSLIPSSLGNLGNMTHFDLSFNNLSGLIPQIETIQRFGPSAFSNNPFLCGAPLDTSCSANGTPSPSAPGKTKVLSISAIVAIVAAALILAGVCLVTIMNIRARRRKKDSDEIMVVESTPLGSSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESIIGGGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFEHEIGRLGNLQHPNLVSLQGYYWSSSMQLILSEFVPNGNLYDNLHGIGYPGTSTSSSNRELYWSRRFQIALGTARALAYLHHDCKPPILHLNIKSSNILLDHKYEAKLSDYGLGKLLPILDNYGLTKFHNVVGYVAPELAQSLRQSEKCDVYSFGVILLELVTGRKPVESPTTSEVVILCEYVKSLLEVGSASNCFDRNLLGFAENELIQVMKLGLICTSEDPLRRPSMAEVVQVLESIRNGLGAH* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1439 846 Pfam Leucine rich repeat 174 229 IPR001611 GO:0005515
Amo05g1439 846 Pfam Leucine rich repeat 368 427 IPR001611 GO:0005515
Amo05g1439 846 Gene3D Phosphorylase Kinase; domain 1 526 634 - -
Amo05g1439 846 Gene3D Ribonuclease Inhibitor 238 466 IPR032675 -
Amo05g1439 846 SUPERFAMILY Protein kinase-like (PK-like) 559 837 IPR011009 -
Amo05g1439 846 Gene3D Transferase(Phosphotransferase) domain 1 635 843 - -
Amo05g1439 846 ProSiteProfiles Protein kinase domain profile. 558 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1439 846 Gene3D Ribonuclease Inhibitor 170 237 IPR032675 -
Amo05g1439 846 CDD STKc_IRAK 564 839 - -
Amo05g1439 846 Pfam Protein kinase domain 560 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1439 846 PANTHER UNNAMED PRODUCT 9 342 - -
Amo05g1439 846 PANTHER UNNAMED PRODUCT 349 842 - -
Amo05g1439 846 PRINTS Leucine-rich repeat signature 390 403 - -
Amo05g1439 846 PRINTS Leucine-rich repeat signature 369 382 - -
Amo05g1439 846 SUPERFAMILY L domain-like 74 456 - -
Amo05g1439 846 ProSiteProfiles Leucine-rich repeat profile. 392 413 IPR001611 GO:0005515
Amo05g1439 846 SMART LRR_typ_2 414 437 IPR003591 -
Amo05g1439 846 SMART LRR_typ_2 390 413 IPR003591 -
Amo05g1439 846 SMART LRR_typ_2 366 389 IPR003591 -
Amo05g1439 846 SMART LRR_typ_2 143 167 IPR003591 -
Amo05g1439 846 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Amo05g1439 846 PANTHER - 9 342 - -
Amo05g1439 846 PANTHER - 349 842 - -
Amo05g1439 846 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Amo05g1439 846 Gene3D Ribonuclease Inhibitor 28 169 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1439 Amo-Chr5 20626816 20631509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1439 27 843 Receptor kinase-like Gene Family AT1G62950 63.146 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Amo05g1439 Pkinase 2.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1439 - - qsu:112029566 1174.07