Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1420 ATGATGCAAGAACCAAGCTTGGGTATGATGGGTGGAGGAGGAGAGATGTCTTCAGCAACAGGGTCCGGCGGCGAGCAGCAACAGCGGCAGCTGAAGGCGGAGATAGCAACACACCCGCTGTACGAGCAGGTTCTGGCAGCACACGTGGCGTGCCTGAGAGTTGCAACGCCAATAGACCAGCTTCCACTTATAGACGCACAGCTATCACAATCACACCATGTTCTTCGCTCCTATGTCTCTCAACACACACTCTCTCTCTCTCCTCACGACCGTCAAGACCTTGATAATTTCCTCGCTCAGTACTTGATAGTGTTGTGTACTTTCAAAGAGCAGCTTCAGCAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACCGGAGTGAGCCTGGGAGAAGGAAGTGGGGCAACAATGTCAGATGATGAAGATGAATTTCAGATGGATTTCTGTTTGGATCAGTCCAGTGGTGGTGGTGGTGATGACATGATGGGATTTGGTCCCTTACTCCCTACGGAATCAGAAAGGTCACTGATGGAAAGAGTCCGTCAAGAACTCAAGATTGAGCTGAAGCAAGGATTCAAGTCAAGGATTGAAGATGTTAGGGAAGAAATCCTGAGGAAACGTAGAGCTGGCAAATTACCCGGTGACACCACTTCTGTCTTGAAGAACTGGTGGCAGCAGCATGCTAAGTGGCCTTATCCAACTGAAGATGACAAGGCAAAACTAGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAACGCAATTGGCACAGCAACTCTCAATCAGTTACCTCCCTCAAGTCCAAGCGCAAAAGAATGTAA 885 0.4915 MMQEPSLGMMGGGGEMSSATGSGGEQQQRQLKAEIATHPLYEQVLAAHVACLRVATPIDQLPLIDAQLSQSHHVLRSYVSQHTLSLSPHDRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEFQMDFCLDQSSGGGGDDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRM* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1420 294 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Amo05g1420 294 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 3 293 - -
Amo05g1420 294 MobiDBLite consensus disorder prediction 1 30 - -
Amo05g1420 294 Pfam KNOX2 domain 87 138 IPR005541 GO:0003677|GO:0005634
Amo05g1420 294 Pfam Homeobox KN domain 236 275 IPR008422 GO:0003677|GO:0006355
Amo05g1420 294 Gene3D - 215 289 - -
Amo05g1420 294 SMART HOX_1 218 283 IPR001356 GO:0003677
Amo05g1420 294 SMART KNOX1_2 29 73 IPR005540 GO:0003677|GO:0005634
Amo05g1420 294 CDD homeodomain 219 280 IPR001356 GO:0003677
Amo05g1420 294 Pfam KNOX1 domain 31 72 IPR005540 GO:0003677|GO:0005634
Amo05g1420 294 SUPERFAMILY Homeodomain-like 218 283 IPR009057 -
Amo05g1420 294 ProSiteProfiles 'Homeobox' domain profile. 216 279 IPR001356 GO:0003677
Amo05g1420 294 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 293 - -
Amo05g1420 294 SMART KNOX2_2 84 139 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1420 Amo-Chr5 20475909 20479841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1420 2 292 Homeobox Transcription Factor Family AT1G62990 78.644 4.30e-171 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo05g1420 KNOX2 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1420 - - pvy:116142557 494.582