Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1409 ATGGCTTCATCATCATCATCTTCAAAGAGGCACCCGCTGTACCACGGAATCAGGTGTCGAGGAGGCAAATGGGTCTCCGAAATCCGGCAGCCACGTAAGGCTTCAAGAATATGGCTGGGGACGTTCCCCACGGCTGAGATGGCGGCTGCCGCCTACGACGTTGCCGCATTAGCACTCAAAGGCGACAGCGCCGTTCTCAACCTTCCTGAGTCAGCTGGAAAGTACCAAATTCCTGTAACTAACTCCCCTGATGACATCCGCAGGGCTGCCACTGCTGCTGCCGCTTTGATGAAGAAGAACCCTCAAGAACCCATCACCACTCCTCACATTATTACTGTTAATAATAATGATAATAACACTCTTGTTGATGGTATTAACAACAACCATATTATTAATTCGTCATCATGGTATGAGGATAATGATTTCATGGACGAGGAAGCTATATTCCGCATGCCAAGTTTGCTGGTGGATATGGCTGAGGGCATGCTTCTGTCGCCGCCGAGAATAATACTCAGCCCATCTCCGCCATCGTACAACTCCGGTGACGGAGGTGACACTTTGTGGAGTTACTTTTGA 576 0.4931 MASSSSSSKRHPLYHGIRCRGGKWVSEIRQPRKASRIWLGTFPTAEMAAAAYDVAALALKGDSAVLNLPESAGKYQIPVTNSPDDIRRAATAAAALMKKNPQEPITTPHIITVNNNDNNTLVDGINNNHIINSSSWYEDNDFMDEEAIFRMPSLLVDMAEGMLLSPPRIILSPSPPSYNSGDGGDTLWSYF* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1409 191 PANTHER ETHYLENE RESPONSE FACTOR 1 191 - -
Amo05g1409 191 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Amo05g1409 191 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
Amo05g1409 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 191 - -
Amo05g1409 191 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Amo05g1409 191 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Amo05g1409 191 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Amo05g1409 191 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1409 Amo-Chr5 20302531 20303106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1409 10 190 AP2-EREBP Transcription Factor Family AT4G25490 46.448 5.59e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo05g1409 AP2 3.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1409 - - gmx:100811020 202.986