Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1372 ATGGAATCATCGTGTGTCCCACCTGGGTTTCGCTTCCACCCAACGGATGAAGAGCTTGTTGGTTATTATCTGAGGAAGAAAGTGGCATCTCAGAAGATAGACCTTGACGTTATCAGAGAGATCGATCTCTATCGTATTGAACCCTGGGATCTCCAAGAGAGATGTAGGATCGGGTATGAAGAGCAGAACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACGGGGACTCGAACGAACAGGGCCACCATGGCGGGGTTCTGGAAGGCCACGGGAAGAGACAAGGCGGTGTACGACAAGGCGAAGCTGATCGGGATGAGGAAGACTCTGGTCTTCTACAAAGGGAGAGCCCCTAACGGCCAGAAAACAGACTGGATCATGCACGAGTACAGACTTGAATCCGATGAAAACGGACCCCCTCAGGAGGAAGGGTGGGTTGTTTGTAGAGCATTCAAGAAAAGGACGACAAACGGGCAAACGAAGACTATGGAAGGATGGGATTCAAGCTACTTGTACGAGGAAGGGAGCGGCGGCGGTGGCGGCCCGGTTGTTGAGTCAATTGAGCAGCTGCTCTCAAGGCAGGGTCATCATCATCATCATCATCAAAGCAGCTTCATGTGCAAGCAAGAAATAGAGAACATGCATGCAAATATAGCAGCAGAGCAATTTGTACAGCTTCCACAGCTTGAGAGCCCAAGTTTGCCGCTAGTTAAGAGGCCAACAACAACAACAAGCACAATGGCACTAGTCTCAGAAAGCAATGAAGAGCATAACATGTTATCTTGCAATAACACGAAGAAAGTAGTGACTGATTGGAGGGATCTTGATAAGTTTGTGGCATCTCAACTGAGTCATGGAGGAGACAATAGTAGGCACGAAACTGAAACCGATGATGCAGCAGTGCTCCCAAGCTTTATGGATAATAACAACCATGACAACAATGGTAGCATCTCGGACATGTCATTGCTGCAGCTTCTGCAGAGTAGTAGTAGTAGTAATAGTAGGGTCAACAATGAAGGGAACAGGTTGATGATGAGCATGAGCCCCTTTCTAAACACAAGCTCTGACTGTGATATTGGGATATGCGTCTTCGAAAATTAA 1107 0.4761 MESSCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKAKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNGQTKTMEGWDSSYLYEEGSGGGGGPVVESIEQLLSRQGHHHHHHQSSFMCKQEIENMHANIAAEQFVQLPQLESPSLPLVKRPTTTTSTMALVSESNEEHNMLSCNNTKKVVTDWRDLDKFVASQLSHGGDNSRHETETDDAAVLPSFMDNNNHDNNGSISDMSLLQLLQSSSSSNSRVNNEGNRLMMSMSPFLNTSSDCDIGICVFEN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1372 368 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 315 - -
Amo05g1372 368 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Amo05g1372 368 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 315 - -
Amo05g1372 368 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Amo05g1372 368 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Amo05g1372 368 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1372 Amo-Chr5 19647272 19649177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1372 1 368 NAC Transcription Factor Family AT2G18060 59.021 3.85e-152 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g1372 NAM 3.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1372 - - aprc:113869508 464.922