Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1363 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCCGCTATCGTCTTCTGCGCCGCTGATGAGGCCGCACTCTGCCGTGCCTGCGATGAGAAGGTTCACATGTGTAATAAACTTGCTAGCAGGCATGTAAGAGTGGGTCTGGCAAGTCCAAGCGATGTGCCTCGTTGTGATATATGCGAGAATGCACCTGCATTCTTCTATTGCGAGACAGATGGAAGCTCGCTTTGTTTGCAGTGCGACATGATAGTTCATGTTGGTGGTAAAAGAACACATGGAAGATATCTTCTATTTAGGCAAAGAGTTGAGTTTCCAGGAGATAAACCTAGTAACATAGAAAACCCAGCTTCTCAACCTATGGAACCAGGGGAGACTAAGAGGGGACAAAATCCACTTCCCAAACTAAAAATGGGGGAGAAGCAACAAAACCACAGGATGCCGCTGCTTTCAACACCAGATCCTGATGCTGACGGACATGCCAAGATGGAGACTAAAATGATTGATTTGAACATGAAGCCTAACAGAATACATGAACAAGCATCAAATAATCAGGTAGGAGTTCATGAGGAATAA 570 0.4579 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNIENPASQPMEPGETKRGQNPLPKLKMGEKQQNHRMPLLSTPDPDADGHAKMETKMIDLNMKPNRIHEQASNNQVGVHEE* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1363 189 CDD Bbox1_BBX-like 4 47 - -
Amo05g1363 189 Gene3D Classic Zinc Finger 2 91 - -
Amo05g1363 189 SMART bboxneu5 1 47 IPR000315 GO:0008270
Amo05g1363 189 SMART bboxneu5 51 96 IPR000315 GO:0008270
Amo05g1363 189 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Amo05g1363 189 CDD Bbox1_BBX-like 56 96 - -
Amo05g1363 189 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Amo05g1363 189 MobiDBLite consensus disorder prediction 170 189 - -
Amo05g1363 189 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Amo05g1363 189 MobiDBLite consensus disorder prediction 105 158 - -
Amo05g1363 189 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Amo05g1363 189 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Amo05g1363 189 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Amo05g1363 189 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1363 Amo-Chr5 19501734 19504373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1363 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.749 3.02e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Amo05g1363 zf-B_box 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1363 - - gmx:100780544 368.622