Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1360 ATGGAGCAACAACAGCTTCAGCAGAGTGGAGCTGCCACCGCCGGAGCAGCACCGCCGGTGGAGGGAGCTAGGGATTTGGGAGATTCACAGCTCGTTGGAGTTCCCGCTGCGGTTGACGGCGATGTTGTCATGGCGGAGAGGGACGGCGGCGGGAGTGTTCCCAATCTGGAGGTGGCCGTCGGGGACGGCGGCGCCACGGCGGTTAAGAGGAAGCGGGGCCGTCCGGCGAAGGGTGCTCCGAGGGCGTCGGCGGCGGGAGCGGCCGCGAGGCTGCAGCAGAAGAAGGAGGAAGAGGAAGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCTTAGTTCTTTGTGATCGCCGGGGTTGTCCTAAAGCATATCATCCCGCGTGTATTAAGCGAGACGAGGCCTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCCTCCCAATTTTTGTGCTATACTTGTACATATTCGGTGTGCAAGAGTTGTACAAAATATGCTGATTTTGTGTGTGTCAGAGAAAATAAAGGTTTGTGCGGAATATGCATGAGAACTATAATGCTGATTGAAAACAATGGCCAGGGAAATACGGAGAAGTGTGAAGTGGATTTTGATGACAAAACCAGCTGGGAATATCTTTTCAAGGTGTATTGGATGTTTTTGAAAGGGAAGATATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCCTGGACAGGTGTTTCTCCATTGGGTGGTAAGGTTGAATGTCCCCGTGAAATTTATAATACTAAGGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATTGACATAGAATCAAATAATTTGAAAAACAAGAAATCTAGGAGACAGCCAATGCTTCATAGCAATGGGGTTGGCTCCGATATGATAACTTCAGCCGGTGACAACTGTGTGCCTTTGCCTGAATGCTCAAATTGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAGTGGTGATACATCTCGCCTGTCTCAATTTGATGTCCAGGGTCTCTTGTTAGAGTATGTGAAGAAGAACAATCTTCGAGACCCCCAGCAGAAATGCCAAATTGTTTGTGATCATAGACTACTAAAATTGTTTGGAAGAGCACGTGTTGGTCACATTGAAATGTTAAAGCTCCTTGAACCCCACTTTCTTACAAAAGAGAATGGCCCTGCAGAAGATACACTTAGAGCAGGAGTCACGAACACTGTTGCTAGCGAAGGGGAGGCAAAAGACAATTGCAATAAGCAGTTGATKTYAGTTGATGATAAGGAATGTAAAACAGATAAAAAAGATGATGTGCATTTGCCACAAAATAATCCAGATGTGTATGCTGCAATAAATGCTCACAACATTAACTTGATCTACYTGCGGCGAAGTCTTTTGGAAAATCTAACTGAAGATGCTGAAAGTGTTCGTGACAAGGTTGTTGGTTCATTTGTGCGGATAAGGATCACTAGTAGTGACAAAAAACAAGAGATGTATAGGCTTGTGCAAGTTGTAGGTATATGA 1557 0.4566 MEQQQLQQSGAATAGAAPPVEGARDLGDSQLVGVPAAVDGDVVMAERDGGGSVPNLEVAVGDGGATAVKRKRGRPAKGAPRASAAGAAARLQQKKEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASQFLCYTCTYSVCKSCTKYADFVCVRENKGLCGICMRTIMLIENNGQGNTEKCEVDFDDKTSWEYLFKVYWMFLKGKISLTFDELLRAKNPWTGVSPLGGKVECPREIYNTKDDKGSGSENSCIDIESNNLKNKKSRRQPMLHSNGVGSDMITSAGDNCVPLPECSNWASKELLEFVAHMKSGDTSRLSQFDVQGLLLEYVKKNNLRDPQQKCQIVCDHRLLKLFGRARVGHIEMLKLLEPHFLTKENGPAEDTLRAGVTNTVASEGEAKDNCNKQLXXVDDKECKTDKKDDVHLPQNNPDVYAAINAHNINLIYLRRSLLENLTEDAESVRDKVVGSFVRIRITSSDKKQEMYRLVQVVGI* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1360 518 Coils Coil 81 101 - -
Amo05g1360 518 CDD PHD5_NSD 103 148 - -
Amo05g1360 518 SMART PHD_3 103 149 IPR001965 -
Amo05g1360 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 194 IPR013083 -
Amo05g1360 518 MobiDBLite consensus disorder prediction 67 92 - -
Amo05g1360 518 ProSitePatterns Zinc finger PHD-type signature. 104 164 IPR019786 -
Amo05g1360 518 ProSiteProfiles Plus3 domain profile. 461 518 IPR004343 GO:0003677
Amo05g1360 518 Pfam Plus-3 domain 466 518 IPR004343 GO:0003677
Amo05g1360 518 Gene3D - 462 518 IPR036128 GO:0003677
Amo05g1360 518 PANTHER BNAC08G48800D PROTEIN 11 517 - -
Amo05g1360 518 SUPERFAMILY SWIB/MDM2 domain 324 401 IPR036885 -
Amo05g1360 518 Pfam SWIB/MDM2 domain 326 399 IPR003121 -
Amo05g1360 518 SUPERFAMILY FYVE/PHD zinc finger 97 156 IPR011011 -
Amo05g1360 518 CDD SWIB-MDM2_like 324 399 - -
Amo05g1360 518 Gene3D SWIB/MDM2 domain 318 407 IPR036885 -
Amo05g1360 518 SMART swib_2 326 404 IPR019835 -
Amo05g1360 518 MobiDBLite consensus disorder prediction 1 32 - -
Amo05g1360 518 PANTHER UNCHARACTERIZED 11 517 - -
Amo05g1360 518 ProSiteProfiles SWIB/MDM2 domain profile. 318 401 IPR003121 -
Amo05g1360 518 SUPERFAMILY Plus3-like 462 518 IPR036128 GO:0003677
Amo05g1360 518 ProSiteProfiles Zinc finger PHD-type profile. 101 167 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1360 Amo-Chr5 19416791 19423094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1360 97 181 PHD Transcription Factor Family AT4G14920 34.118 1.84e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Amo05g1360 SWIB 5.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1360 - - aprc:113869503 708.753