Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1349 ATGGATACGATTCAAAAGCCACTACTAAGCATAGCCAACTTTGAGCTCCAACCGCTCCACATGGCCGCCATGCTCGTAATCCCACTGATGTTGCTGCTAGGTTTAGTCTCTAGAATCCGCCGAAGGCCACCGTATCCACCAGGGCCTAAAGGCTTACCCATCATAGGCAACATGCTTATGATGGAACAATTAACACACCGTGGGCTGGCTAAACTAGCAAGAGAATACGGCGGAATCTTCCACCTGCGCATGGGGTTCCTCCACATGGTGGCGATTTCCGACCCTGACTCAGCACGCCAAGTCCTCCAAGTCCAAGACAACATCTTCTCCAACCGTCCAGCCACCATAGCCATAAGCTACCTAACCTACGACCGCGCGGACATGGCCTTCGCCCACTACGGCCCCTTCTGGCGCCAGATGCGTAAGCTCTGTGTCATGAAGCTCTTCAGCCGCAAGCGCCAAGAGTCATGGGAGTCCGTCAGAGACGAAGTCGACAAGGTGGTCGGTTCCGTCGTCTCCAACACCGGAAAACCCGTCAACATTGGCGAACTCGTTTTCAACCTTACCAAGAACATCATCTACCGCGCCGCGTTCGGGTCCAGTTCCCAAGAAGGTCAAGACGAGTTCATCAAGATCCTTCAGGAATTCTCGAAGCTTTTTGGAGCTTTCAACGTCGCAGATTTCATCCCTTTCCTTGGTGGAATCGATCCTCAGGGCCTTAACAACAGGCTCGTCAAGGCTCGAGCTGCGTTGGACAGTTTCATTGACGGGATCATCGATGAGCATGTTCACAAGGTAAAGAACAACAACAACAACAATGATCACAGTAATAATATTGAAGAGTCTGATATGGTGGATGAGTTGTTGGCTTTCTACAGCGAGGAGGCCAAGCTAAACAATGAAGCGGACGATCTGCACAACTCTATCAAACTCACAAAGGACAACATCAAAGCCATCATTATGGACGTGATGTTTGGAGGTACAGAGACGGTAGCGTCGGCAATAGAGTGGGCAATGGCAGAACTCATGAGAAGCCCAGAAGATCTGAAGCGGGTTCAACAAGAGCTAGCCCAAGTTGTGGGCCTGGACCGTCGGGTAGAGGAGTCCGACTTCGAGAAGCTCACCTACCTCCGTTGCGCCCTCAAGGAGACCCTCCGCCTCCACCCGCCGATCCCTCTCCTCCTCCACGAAACAGCGGAAGAAACAACCGTCGGGGGCTACTTTATCCCGAAGCGGGCGCGCGTCATGATCAACGCGTGGGCCATAGGAAGGGATCCGAGCAGCTGGGAGGAGCCGGAGACGTTCAGGCCCGGGCGGTTCTTGAAGGCCGGCGTTCCGGACTTCAAGGGAAGCAACTTCGAGTTCATACCGTTCGGATCGGGTCGAAGGTCTTGCCCGGGGATGCAGTTGGGGCTGTACGCGCTTGAGCTGGCGGTGGCCCATCTACTCCACTGCTTCACGTGGGAGCTTCCCGACGGGATGAAGCCGAGCGAGATGGACATGAGCGACGTCTTCGGACTCACCGCTCCCAGAGCCACTCGCCTCGTCGCTGTTCCCACAAAGCGCGTGCTCTGCCCTCTCTCTTAG 1587 0.5476 MDTIQKPLLSIANFELQPLHMAAMLVIPLMLLLGLVSRIRRRPPYPPGPKGLPIIGNMLMMEQLTHRGLAKLAREYGGIFHLRMGFLHMVAISDPDSARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRQESWESVRDEVDKVVGSVVSNTGKPVNIGELVFNLTKNIIYRAAFGSSSQEGQDEFIKILQEFSKLFGAFNVADFIPFLGGIDPQGLNNRLVKARAALDSFIDGIIDEHVHKVKNNNNNNDHSNNIEESDMVDELLAFYSEEAKLNNEADDLHNSIKLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPEDLKRVQQELAQVVGLDRRVEESDFEKLTYLRCALKETLRLHPPIPLLLHETAEETTVGGYFIPKRARVMINAWAIGRDPSSWEEPETFRPGRFLKAGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVAHLLHCFTWELPDGMKPSEMDMSDVFGLTAPRATRLVAVPTKRVLCPLS* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1349 528 PANTHER CYTOCHROME P450 84A1-RELATED 13 527 - -
Amo05g1349 528 SUPERFAMILY Cytochrome P450 39 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 188 206 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 418 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Amo05g1349 528 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 13 527 - -
Amo05g1349 528 Gene3D Cytochrome P450 38 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g1349 528 Pfam Cytochrome P450 46 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1349 Amo-Chr5 19173177 19176931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1349 53 527 Monolignol Biosynthesis Gene Families AT4G36220 78.737 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1349 K09755 - gmx:100783430 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1349 05 19173177 19176931 Amo11g0576 11 10378898 10383105 PCT
Amo01g0141 01 2678706 2682968 Amo05g1349 05 19173177 19176931 PCT