Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1338 ATGGGTCGTGGAAAGATTGAGATAAAGCTCATCGAGAACCCAACCAACAGGCAAGTTACATACTCAAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAGAACAACAAGATGCACGAGTACATCAGCCCTGGCCTTAGCACAAAGAAGATCATTGATCAGTATCAGAAAACTTTGGGAGATATCGATCTCTGGCATTCTCACTATGAGAAAATGCTTGAGAATTTGAAGAAACTCAAAGATATTAATAATAAGCTCAGAAGACAGATCAGGAATCGGATAGGGGAGGGTAGCTTGGATATGGATGATATGAGCTTTCAGCAACTGCGTACTCTTGAAGAGGATATGGTTTCTGCCATTGCCAAAATACGCGAACGAAAGTTCCATGTGATCAGAACTCGGACTGAAACCTGTAGGAAAAAGGTGAGAAGCTTGGAGCAGATGAACGGAAATCTCCTTCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTATATTACACGATGAAGGAGAGCAGGAATCAGCAGTTGCACTGGCCAATGGAGCCTCCAACCTCTATGCATTCTGCCACCACCATACTCATCTCAATCACCACCTTCATAACCACCATGCACCACCGGAACCCTTCAAAAACGATGATCTCCGCCTCGCTTAA 705 0.434 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLSTKKIIDQYQKTLGDIDLWHSHYEKMLENLKKLKDINNKLRRQIRNRIGEGSLDMDDMSFQQLRTLEEDMVSAIAKIRERKFHVIRTRTETCRKKVRSLEQMNGNLLLELEKCVIHPQFILHDEGEQESAVALANGASNLYAFCHHHTHLNHHLHNHHAPPEPFKNDDLRLA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1338 234 Coils Coil 85 105 - -
Amo05g1338 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Amo05g1338 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo05g1338 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo05g1338 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo05g1338 234 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Amo05g1338 234 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Amo05g1338 234 MobiDBLite consensus disorder prediction 215 234 - -
Amo05g1338 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo05g1338 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Amo05g1338 234 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 233 - -
Amo05g1338 234 MobiDBLite consensus disorder prediction 217 234 - -
Amo05g1338 234 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo05g1338 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Amo05g1338 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo05g1338 234 Pfam K-box region 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo05g1338 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1338 Amo-Chr5 18874583 18876637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1338 1 229 MADS-box Gene Family AT3G54340 47.826 2.69e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo05g1338 K-box 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1338 K09264 - gmx:100784496 380.178