Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1320 ATGGCAGGTTTGTTCTCACTAGGCGGTGGTAGTAGTAGTAGTAGTGGTAGAGGAGGGAGAGGGAACACAAACCAACAACAACAACAACACGACCAACACCAACAACACGCGGAAATTCCTCCCTCCGACACCTTTTACTGGTACAAGAATGAAGACGTTTCCTCGTACCGAGGTGGCTTGGAGCTGTGGAACCATCATCATCATCATCACCAACCGGAACACGACCTCATACCTCAAGCAAGGCCTCTCTTCCACCAAGATCTTTACAGCTCCGCGGCTGCTCTAGGAGTGGGTCCAACCACTGTGTCCGACGATCAGTCACCCTCGAGATCGGCCTTCCTGGTGACGGCGTCGGCCGTGGGGAGCGGAGCAGCAAGCGGAGCAGGAAGTGGAGCAGGTGGGATTAGCTGCCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTGGGTTCCCGCTTCCAAGCGCCGCGAGAGGCAGCAGCAACTCGCCTCTATCCAACAACAACAGCTTCTTGCTGCTGATGTTCCCAAGCGCCAAAGAGATCATGCCTCTAGTACTCGTTTACCCACAAACCCTTCTCCTTCAGCCTCAGCTTCAGGGATGGAGAATTTTCCTGCAGTAGTGAGCTCTCCAGCTGAATTCAGATGCGTACGTGTGAGCGGAATCGACGACACAGAAGACGAGTATGCATATCAAACGGCAGTCAACATTGGAGGACACGTCTTCAAAGGGATCCTCTATGACCAGGGTCCAGATCACGCAACCACCACCACCACCAACAGCAGCAGCTACGTCGCCGGAGACACCTCCTCCACCGGCGCTGCTGCTCATCACCCTAATCTCAACCTCATTGCTCCCAACACCAACACCACAACTTCAGCTCTCGTCTCCGCTGCACACACAACGCAGCAGCTCGTAGATCCTTCATCCATGAATCCACCTCCTCCTCTCAGCACCTTCATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCCAAGATCTTGA 1077 0.546 MAGLFSLGGGSSSSSGRGGRGNTNQQQQQHDQHQQHAEIPPSDTFYWYKNEDVSSYRGGLELWNHHHHHHQPEHDLIPQARPLFHQDLYSSAAALGVGPTTVSDDQSPSRSAFLVTASAVGSGAASGAGSGAGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLASIQQQQLLAADVPKRQRDHASSTRLPTNPSPSASASGMENFPAVVSSPAEFRCVRVSGIDDTEDEYAYQTAVNIGGHVFKGILYDQGPDHATTTTTNSSSYVAGDTSSTGAAAHHPNLNLIAPNTNTTTSALVSAAHTTQQLVDPSSMNPPPPLSTFMAGSSGTQFFPHPRS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1320 358 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 356 IPR007818 GO:0003700|GO:0006355
Amo05g1320 358 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 227 274 IPR006511 -
Amo05g1320 358 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Amo05g1320 358 MobiDBLite consensus disorder prediction 175 225 - -
Amo05g1320 358 MobiDBLite consensus disorder prediction 1 42 - -
Amo05g1320 358 PANTHER PROTEIN SHORT INTERNODES 1 356 - -
Amo05g1320 358 MobiDBLite consensus disorder prediction 7 39 - -
Amo05g1320 358 Pfam Domain of unknown function (DUF702) 134 275 - -
Amo05g1320 358 MobiDBLite consensus disorder prediction 175 196 - -
Amo05g1320 358 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1320 Amo-Chr5 18701660 18703845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1320 1 346 C2H2 Transcription Factor Family AT5G66350 43.767 1.34e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo05g1320 DUF702 1.8e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1320 - - ahf:112720334 347.821