Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1301 ATGGTAATTTTGACTAAACTTATTTTTTCATTTTTTTTATTTCAGCTTCCATCAATTGAAGTTGTTGCAAATTCACCACCAATTGAACGTGATCATAGGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTACAGAAGTTGCTGAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGGTTGTAATTGGAGGGACGAGACTTGCCTTAGAACAGAAACGTATGCAAGCAAATCCTTGTCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTGGAGAATACTGTTGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTGTTAGTGCTCGATGAAGCTGATCATTTACTGGACATGGGATTTCAAAAATATGTTTTGAATACACAGTTTATATTTTGA 432 0.3958 MVILTKLIFSFFLFQLPSIEVVANSPPIERDHRRPPIHVLVICPTRELASQAATEVAELLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTVGFATRLMGVKVLVLDEADHLLDMGFQKYVLNTQFIF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1301 143 PANTHER RNA HELICASE 14 134 - -
Amo05g1301 143 Pfam DEAD/DEAH box helicase 13 135 IPR011545 GO:0003676|GO:0005524
Amo05g1301 143 Gene3D - 12 140 IPR027417 -
Amo05g1301 143 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 143 IPR014001 -
Amo05g1301 143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 137 IPR027417 -
Amo05g1301 143 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 31 14 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1301 Amo-Chr5 18521840 18522466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1301 38 138 Eukaryotic Initiation Factors Gene Family AT3G13920 34.653 7.09e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1301 - - aip:107642040 249.98