Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1293 ATGAGTGCATACATGGCGTCTTTGTCTTCTTCCTTCACAAACTTTCGATCCGCTTCCTCATGGTTCGAGGTCTACGCCGCCTTCTCCACTCTCATGATGCTTCTCAGAACAGCTGTCAACGACATCGTGCCGGAGAAGCTCCGCTCCTCCATTGCCAAAAAGCTCGAGTCATTCTTCTTCCCCACACACAAACCAAACAACCTCGTATCCATCAGAATCAACCAAAGATGGGATGGCCATCACGGCGAACACAACGAACTCTACAACGCTGCGTCCAAGTACCTCCCAACCAGAATATCCGAAACCTACAAGGCCCTCAGATTAGCCAAATTGAACTCTCACAAGGGCCTCATGCTCGCAATCGACGCCAACCAAGAAGTAATCGACGAATTCGAAGGGATCCGGTATACTTGGACTCTCGATTTAGGCTCCGACCAAAATGCCGACTCCTCGAAATCTGATAAGGATCCTGCGTTTGTTCTAACCTTCAACGAGAAGCACAGAGACACCGTGATGAAGAGGTACATTCCGCACTTGCTTGCAACCTGCGAGGCCATGGATGCAGCAGACAAGAGCATTAAGATATTTTCAATGGCGCACGGGTATTGGAACGAGAGTGAGTTGTGTCACCCTGCCACGCTGGACACGCTCGCTTTGGATCCTGAATTGAAGCGAACCATTGTGGATGATGTGGACCGGTTCTTGAAGAGGAAGGAGTTCTACATGAAAGTGGGTAAGCCTTGGAAACGTGGCTACTTGTTGTACGGTCCTCCTGGAACGGGGAAATCTAGCCTCATTGCTGCCATTGCGAATTACTTGAAGTTCAATGTGTATGATTTGGAGCTGGACTCCATTACCTCCAACGAGAGCCTGATGCTACTGATGAGGAGTACAACCAGTCGTTCCATCATCGTCATTGAAGACATTGACTGCAACAAGGAGGTCCATGTTCGTCGCAGAGAACAAGAAGACTTCGGGGACACTGATTTAGAGTCAGTCCAGCATGACGATGCTGCCCCTGAAATTATAAAGGTTGACAAGTTTACCCTCTCGGCTCTGCTCAACTACATGGATGGCTTGTGGTCAGGCTACGGAGAGGAAAGGATTATAATATTCACCACAAACCACAAAGACAAGATTGACCCGGCATTGTTGAGGCCAGGCAGGATGGACATGCACATTCACTTGTCCTTCCTCAGAGCCAAGGCGTTTAGAATATTGGCCTCTAATTATTTGGACATTCCGGGGGACCAGCCTCATCCCCTGTTTCAGGAAATTGAGGACTTGTTGGACACAACAGATGTCACTCCAGCGGTGGTGGCAGAGCAGTTGATTAGAAGCGAAGATCCTGATGTTGCTTTGGATGGACTCTTTAAGTTCCTTCAAGAGATACACAATTCAGGCAAAAGTAGAGATTCCGCTGAGACTTTAGAGATTTGA 1440 0.484 MSAYMASLSSSFTNFRSASSWFEVYAAFSTLMMLLRTAVNDIVPEKLRSSIAKKLESFFFPTHKPNNLVSIRINQRWDGHHGEHNELYNAASKYLPTRISETYKALRLAKLNSHKGLMLAIDANQEVIDEFEGIRYTWTLDLGSDQNADSSKSDKDPAFVLTFNEKHRDTVMKRYIPHLLATCEAMDAADKSIKIFSMAHGYWNESELCHPATLDTLALDPELKRTIVDDVDRFLKRKEFYMKVGKPWKRGYLLYGPPGTGKSSLIAAIANYLKFNVYDLELDSITSNESLMLLMRSTTSRSIIVIEDIDCNKEVHVRRREQEDFGDTDLESVQHDDAAPEIIKVDKFTLSALLNYMDGLWSGYGEERIIIFTTNHKDKIDPALLRPGRMDMHIHLSFLRAKAFRILASNYLDIPGDQPHPLFQEIEDLLDTTDVTPAVVAEQLIRSEDPDVALDGLFKFLQEIHNSGKSRDSAETLEI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1293 479 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 14 468 - -
Amo05g1293 479 Gene3D - 205 394 IPR027417 -
Amo05g1293 479 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Amo05g1293 479 Gene3D - 395 465 - -
Amo05g1293 479 PANTHER BCS1 AAA-TYPE ATPASE 14 468 - -
Amo05g1293 479 CDD AAA 249 397 - -
Amo05g1293 479 SMART AAA_5 248 400 IPR003593 -
Amo05g1293 479 Pfam ATPase family associated with various cellular activities (AAA) 253 396 IPR003959 GO:0005524|GO:0016887
Amo05g1293 479 Pfam Domain associated at C-terminal with AAA 43 140 IPR025753 -
Amo05g1293 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1293 Amo-Chr5 18389469 18391374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1293 209 396 Calmodulin-binding Proteins AT3G56690 26.020 6.30e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1293 - K08900 gmx:100789094 565.844