Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1282 ATGACGAAATCGTTCTTAAGTTATGTTGAACTGAAGAAACAGGTCATGAAGGACCTTGAAAATGAACGTGATATTGAAGCAGGGCAACTCAACCCCACACAACTAGAAGACCCTAATCTCACTCAGTTCTTCCAAGAAGTGGATGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAAGCAAAGTCCACACACAGTGCAAAAGTCCTCCGTGGACTAAGAGACCGCATGGAATCTGACATGGTTGCGGTGCTTCGCAAGGCCAAGATCATCAAGGCAAGGCTTGAGGTCCTGGATCAATCCAACATAGCCAATAGAACTTTATCAGAGTCCTATAAAGAGGGTACACCAATTGATAGGACAAGGAGTTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGAGTTTCAGTCCTTGAGGGACAAGATACTGTCTGATTACAAGGAAGATTTGAAGAGAAGGTACTACAGCGCGACCGGCGAGGTTCCGAGTGAGGAGGTCATGGACAAGATGATCTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGACATGGGAAATCAGGTTAGACATGAGGCTGTGATGGATATTCAGAGGAGTTTGAACAAGCTTCACCAAGTGTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGGGAGAAATTGGACAATATTGAAGATAATATGGCCAGTGCTGGTAACTACATCCATGGTGGAACTAATAGTCTTTACTATGCCAATCAGATGAAGAAGAAGAACCATAAATGGTGGTGCTGGGTTTGTGCTGTTGGGTTGATTGTGCTGTTGGTGTGCTTCATAGCAATGTTGACTTCTTGA 891 0.4355 MTKSFLSYVELKKQVMKDLENERDIEAGQLNPTQLEDPNLTQFFQEVDAIKVEMEEITNLLFDLQQLNEEAKSTHSAKVLRGLRDRMESDMVAVLRKAKIIKARLEVLDQSNIANRTLSESYKEGTPIDRTRSSVTNGLRVKLRDMMNEFQSLRDKILSDYKEDLKRRYYSATGEVPSEEVMDKMISGSLKVEFLAGKTDADMGNQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKLDNIEDNMASAGNYIHGGTNSLYYANQMKKKNHKWWCWVCAVGLIVLLVCFIAMLTS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1282 296 SMART SynN_4 35 162 IPR006011 GO:0016020
Amo05g1282 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Amo05g1282 296 Pfam SNARE domain 238 288 IPR000727 -
Amo05g1282 296 SUPERFAMILY t-snare proteins 37 257 IPR010989 GO:0016020|GO:0016192
Amo05g1282 296 SMART tSNARE_6 195 264 IPR000727 -
Amo05g1282 296 Coils Coil 50 74 - -
Amo05g1282 296 Pfam Syntaxin 42 237 IPR006011 GO:0016020
Amo05g1282 296 PANTHER SYNTAXIN 7 292 IPR045242 -
Amo05g1282 296 CDD SNARE_syntaxin1-like 206 261 - -
Amo05g1282 296 CDD SynN 43 190 IPR006011 GO:0016020
Amo05g1282 296 PANTHER SYNTAXIN-112 7 292 - -
Amo05g1282 296 Gene3D - 199 295 - -
Amo05g1282 296 Gene3D - 36 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1282 Amo-Chr5 18206148 18207038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1282 1 296 SNARE and Associated Proteins AT2G18260 58.416 5.07e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1282 K08486 - gmx:112997615 497.664