Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1273 ATGATTGATGTAAAGACTAAACTCCCCAATTCTGATACCATTGATCTCCACTACTTTCTAGGAGTTCAAGAAGCAAAAATAAAAGGAGTATTCGCTGTGATGTCCGTGAACGCCATTTCTGCGCAGGACTGCATGGAGGAAGAATCCGCGGCGGACGAGTGTTATCGGCCGTTGTCTGCCGAAGAAAAGGGAGGCGATGGTACCGATGCCTTTGGTCCAGGCGGCGACGAATTCGGTGACGAAGTTGATGATGGGGAATTAGGGGTAAAGTCGGATGCAGAGGAGAATTTTGGGGATAGCTTCTTTGACAACTGGGAAGAGAGAGCACTGGACGGCGTAGCAGAGTTGCGGTGTGTAAATTTCAAGGAAATAACTGCAAAGGAGAGTATGATGTGTCATTTTCCGGATCGATCGGTGGCATTCTTGTTTTATAGTTTGTATGCAAAGATGAATGGTTTCGCTGTGAGGAAGAATAAGATTCGGCGAAATGTGAGGAATGAGATTACTCAACAAGAATTTGTATGTTTCCGGCAAGGGTTTAAAGGAATGGGGTCCGTTAACTACGGCATGCGACACAAGCATGAGCCAAAGGCGGAGACCAGATGCGGTTGTGAGGCAGAGATGCGCGTCCACGTGCACTCCGAAAGTGGTAGATGGATAATATCATACTTTCAGGACTTTCACAACCACGAGATGCTGGACGATAGACTGACTTTCATGCTACCGGGCCATAGGAAAATGGATGCAGCCGCCCTGGAACAAATGAACATGATGCTTAGAGTTGGGATTAAAACCCCACAGATTTATTCATCTTTTGTGCAGACTGCCGGGGGATTCCAAAACCTTCCGTTTCTAAAGAGGGACATGGACTTTGTTGAGCAGTTTATGCGTTGCATATCCCAAATGAGGTCCAGGGAAGCACACTCTGATCTGTTATCCGTGGTTGGGGAACCAGTTCTACAGAGTCCATTTCATGATTTGGAGAGGTCAGCAGCAAAGAAGCTGACCAGGGCAATTTTCTTCAACTTCAGGCCCATGTTTTTCCGCGCTTGCACACCGAAGGTACGAACACACACATGGACCCAGACTTCTGATACATTCACTTTGTGTAGGTCAGCTAATGTGCGTAGGGAGTGGCAAGTGTGTCACTATAGTGACAGTAACAGTTTCAAGTGCTCTTGCTTGCGAATGGAGTCCCTTGGTATACCGTGTGATCACATTGTAGCAGTGCTGAAAGGTCCGTTTTGCTGGGATTCAACGATCACCTGCCGCAATTGGATGTTGAATGATTTATGTAGGGAAATGTCTGTTCTTGCGTGTCGTAACGAAGCTGAATTTGCGGACATGACGGATAAAGTTCTTCATAAGATAGCGCGGCTGAAAGAGATTGAGGATTCTGGTGATGCAGTTGGTCTGAATGAAGTTGGGGAGGCTTCAACACTAGAGGGCTGTGTGAGGGATCCACAGCTGGTGCGGTGTCAAAAGAGGCAAAGAAAAGAAACGGTGAAGGGGGTGAAGAGGTGCGGTCTTTGTCGCCAGAGAGAGCATAATCAAGTATCATGCCACTTAAATCCCAACAGCAGAATGAATACACAAGAGGGTGCATCATACTTTGGCGGTGAAGGTGAAGGTGAGACTGGCACAATGGAGGACTCGTCTGAGGAGGAGGAGCTGCCGACATGGGACGATGCAGCGGACCTTGCCCTCGACGAGGGCTATGATTCACAGGGCAGAATTTAG 1740 0.4782 MIDVKTKLPNSDTIDLHYFLGVQEAKIKGVFAVMSVNAISAQDCMEEESAADECYRPLSAEEKGGDGTDAFGPGGDEFGDEVDDGELGVKSDAEENFGDSFFDNWEERALDGVAELRCVNFKEITAKESMMCHFPDRSVAFLFYSLYAKMNGFAVRKNKIRRNVRNEITQQEFVCFRQGFKGMGSVNYGMRHKHEPKAETRCGCEAEMRVHVHSESGRWIISYFQDFHNHEMLDDRLTFMLPGHRKMDAAALEQMNMMLRVGIKTPQIYSSFVQTAGGFQNLPFLKRDMDFVEQFMRCISQMRSREAHSDLLSVVGEPVLQSPFHDLERSAAKKLTRAIFFNFRPMFFRACTPKVRTHTWTQTSDTFTLCRSANVRREWQVCHYSDSNSFKCSCLRMESLGIPCDHIVAVLKGPFCWDSTITCRNWMLNDLCREMSVLACRNEAEFADMTDKVLHKIARLKEIEDSGDAVGLNEVGEASTLEGCVRDPQLVRCQKRQRKETVKGVKRCGLCRQREHNQVSCHLNPNSRMNTQEGASYFGGEGEGETGTMEDSSEEEELPTWDDAADLALDEGYDSQGRI* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1273 579 ProSiteProfiles Zinc finger SWIM-type profile. 379 415 IPR007527 GO:0008270
Amo05g1273 579 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 112 261 - -
Amo05g1273 579 MobiDBLite consensus disorder prediction 522 579 - -
Amo05g1273 579 Pfam SWIM zinc finger 391 411 IPR007527 GO:0008270
Amo05g1273 579 MobiDBLite consensus disorder prediction 547 569 - -
Amo05g1273 579 Pfam FAR1 DNA-binding domain 143 233 IPR004330 -
Amo05g1273 579 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 112 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1273 Amo-Chr5 18108995 18112782 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g1273 FAR1 1.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1273 - - aip:107633557 414.846