Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1270 ATGGATAACAACGGTCTTAACCTGTTTTCCGCTCCCCAGGAAAGGAGGGTGTCATTTGCAGAACTAGCAAGACAGTATGAGATGGCAGCCAACAACAACAATGATGATGAACTCCCAAAAATGAAGAGGAGGGTGAAACTACAACTTATAGATGATATGAATTCAAGGAAAGCTACATTCAGAAAGAGACGTGCTGGATTGTTGAAGAAATTGGAGCAGCTCGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTGGTCCAGGGGACAAGAGTCCTACAGTATGGCCGTCAGTGGAGGAGGCTAAAGAGATCGTGGAGAGGTTTGAGGAGATTCCGGAGCCAGAGCGGTCGAGCAGAATGGTAACTCATCAGGAGTACAGGCAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACGATCAGAAAGAGATGGCCATCTTCCTGCATAAAATCTATAACGAACATAGGCCTATAACTGATTTTAGCGATGATGAGTTGGACCGTTTTGTCACCTATGTTGACGACAAGTTGAAGGCGGTTAGAAACAACATAATAAGAACCCGCCGCTCTGAAGTGTCAATTTCGTCGCAGCCACCACCGGCGCCTCCATCAGCAGTGGCGGTGCAGCCACTGATTATTTCTGGTGAAGTTGATAGCAGTGTGCAAGATGAATTGTTATTTAATGCAGAGCAACAACAGAAGAATTTAGAAGATGTTGTTGTTCCTAATGATGAACCGGATGATGATTTTTTTGGAGGATTGTTCTTTGAAGATAAGAGTAACGGGTCGGTTCTGTTTCCTGTTGGTAATGAGAACGTGTTGGTGGTTCCACCGGCTGAAGCTAATGAAGAATTATTTGGGTTTAGAGATTTCGCTGATTCAGTGGATTTTGGTGATCTTGACAATTTTGGTGACCTCACTGGCAATGCCGCCGGAACTACTAGTAATGATAATCATAAAGGGCCGTGGTAG 996 0.4438 MDNNGLNLFSAPQERRVSFAELARQYEMAANNNNDDELPKMKRRVKLQLIDDMNSRKATFRKRRAGLLKKLEQLAILCDIQACIAIFGPGDKSPTVWPSVEEAKEIVERFEEIPEPERSSRMVTHQEYRQQKVIWMEKQLEKLKKLNDQKEMAIFLHKIYNEHRPITDFSDDELDRFVTYVDDKLKAVRNNIIRTRRSEVSISSQPPPAPPSAVAVQPLIISGEVDSSVQDELLFNAEQQQKNLEDVVVPNDEPDDDFFGGLFFEDKSNGSVLFPVGNENVLVVPPAEANEELFGFRDFADSVDFGDLDNFGDLTGNAAGTTSNDNHKGPW* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1270 331 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 42 240 - -
Amo05g1270 331 Gene3D - 52 134 IPR036879 GO:0003677|GO:0046983
Amo05g1270 331 PRINTS MADS domain signature 62 77 IPR002100 GO:0003677|GO:0046983
Amo05g1270 331 PRINTS MADS domain signature 42 62 IPR002100 GO:0003677|GO:0046983
Amo05g1270 331 PRINTS MADS domain signature 77 98 IPR002100 GO:0003677|GO:0046983
Amo05g1270 331 CDD MADS_SRF_like 41 123 IPR033897 GO:0000981|GO:0000987|GO:0045944
Amo05g1270 331 SMART madsneu2 40 99 IPR002100 GO:0003677|GO:0046983
Amo05g1270 331 PANTHER SERUM RESPONSE FACTOR HOMOLOG 42 240 - -
Amo05g1270 331 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 92 IPR002100 GO:0003677|GO:0046983
Amo05g1270 331 SUPERFAMILY SRF-like 42 132 IPR036879 GO:0003677|GO:0046983
Amo05g1270 331 ProSiteProfiles MADS-box domain profile. 40 92 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1270 Amo-Chr5 18066716 18068120 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1270 41 223 Type I MADS-box Gene Family AT1G31630 31.217 4.45e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo05g1270 SRF-TF 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1270 - - adu:107487931 615.92