Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1268 ATGGCAGTGATCCAAGCCAACAACAACAATGATGATGAAATTTTGAAAATAAAGAAGAGGGTAAAACTACAACTGATAGATGATATAAGTTCAACGAAAGCTACATTTAAGAAGAGATGTGCCGGGTTGTTGAAAAAGTTGGAGCAGATCGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTTGTAGAATAAAATCTTTTTAA 210 0.3524 MAVIQANNNNDDEILKIKKRVKLQLIDDISSTKATFKKRCAGLLKKLEQIAILCDIQACIAIFCRIKSF* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1268 69 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 64 IPR002100 GO:0003677|GO:0046983
Amo05g1268 69 ProSiteProfiles MADS-box domain profile. 16 63 IPR002100 GO:0003677|GO:0046983
Amo05g1268 69 Gene3D - 28 68 IPR036879 GO:0003677|GO:0046983
Amo05g1268 69 SUPERFAMILY SRF-like 18 64 IPR036879 GO:0003677|GO:0046983
Amo05g1268 69 SMART madsneu2 16 68 IPR002100 GO:0003677|GO:0046983
Amo05g1268 69 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Amo05g1268 69 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Amo05g1268 69 PRINTS MADS domain signature 53 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1268 Amo-Chr5 18053122 18053551 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1268 17 63 Type I MADS-box Gene Family AT1G31640 46.809 2.20e-09 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo05g1268 SRF-TF 9.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1268 - - adu:107487931 100.138