Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1249 ATGGAGCCCCTCCCTTCTCTCCCTCCCCCTCTAAACAACAACAACATGGACGATTCTTCTTCAATTTGGGATCTTACTTATCTTCTCGATTTCAACCTCGACGATTTACCCCTTGACCCTCACCAACCATCTCAACCGTTGGATTTCGATCCTCCAGCTCCTCCCGATCCACACAATATTCCTCCTGCTTCTCCTCTTCCCGCCAACGACAAGGTTCGGAAACGCGACCCGAGGCTCACGTGCTCCAACTTTCTCGCGGGCCGGGTTCCATGCGCGTGCCCCGAGATCGATGCTCAGCTCGAGAACGAGGGTCTCCCCGGCAAGAAGCGCGTGCGCACCGTTTCCGCCGCGCGTGGCTCACCCCCGACGGTTTGTTGCCAGGTTCCTGGCTGCGAGGTCGATATCACGGAGCTGAAGGGGTACCACCGGAGGCATAGGGTTTGCCTACGCTGTGCTAATGCTGCCACTGTTATGCTCGACGGCGAGGCCAAGAGATACTGTCAACAGTGTGGCAAGTTTCACGTGTTGTCAGATTTTGATGAAGGTAAACGTAGCTGTAGGAGAAAGTTAGAGCGCCATAACAATAGGAGGCGAAGAAAGCCAGCAGATTCAAGAGCTGAAGCTGCTCATGAACCTCTACCTGTTGCACAAAATGAGGATTCAACTAATGACGGGGAAACAGGAAAAGGTTTAGATTCTTCAAATTTGAGTTGTGAAATAAATGAAAAAGAAGTGTCACTGGATCTTGAAGATGAACCAGTTGCCAATCTGAACTCAGCTCCTGATATGCAGAATATTACAAATGACAGTGTTATGACTTTTCTTGCTTCTGGGGAAACACAAGTGAATAGTGGAAAAGATGTTTCCAACCTCTCTAACTCTCCTTCATATTGTGACAATAAGAGTGCTTATTCATCTTTGTGCCAAACAGGTCGGATTTCTTTCAAGCTTTATGATTGGAACCCTGCAGAATTTCCTAGAAGGCTACGCCACCAAATATTCCAATGGTTGGCGAGTATGCCTGTTGAGCTTGAGGGATATATCCGCCCAGGGTGTACCATCCTGACAATTTTTATCGCCATGCCAAAGAATATGTGGATAAATTTACTGGAAGACCCTATGTACTATGTGCGCGATCTTGTTGCTCCTGGAAAGTTCCTATCTGCAAGAGGCAATGCACTAATTTATCTGAATGATATGTTCTTCCGCATTATGAAAGATGGAACTTCTGTGACAAAAGTCAAGGTAAATATGCAGGCACCAAGGCTTCACTATGTTCATCCCACGTACTTTGAGGCTGGGAAACCTCTGGAGTTTGTTGCTTGCGGAAGTAACTTGATGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAAGTATCTGAAGTGTGAATATTGTGTTCCATCTCCACATAACTGGACTGGGAACAATATGTCATGTGCTTTTGAGAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAACTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTCATTCCTGTTCTCATTGGGGACAAAGAAATTTGCAGTGAGATGAGGACATTACAGCAAAGGTTAGATGAGTCTCTTCATTCTAAACAATTCCAGTCTACATCTGGTGGTTCTATCTGCAGCTTGTGTGAAGATTTTGCACATAGGCACACATCATCAGACTTGCTTGTAGATATAGCATGGTTGCTTAAGAACCCTACCTCAGAAAATTTTGAGAGAATGATGACGGCTTCACAAATTCAAAGATACTGTTACCTGTTGGACTTTCTTATATGCCATGATTCAATACTCATTTTGGAAAAAATATTACCAAAGTTGGTGATCTTTACAGAAGGCTTGAAATCAAATATTGTGGTTAGTCAGACGAGTGATGTTGATGTGACACAACTACTGAATTGCATGCATCTTGCTAGAGATGTTATTAATCAGAATCATCAGAAAGGCAGAGGCATAGTTGTGCATTCTGAGACAGAAGGCTTTAGGATTGAAAAAACCTGCACCCAAGACAGCTTGCCATCAGTTTCGAGAATAAAAAGTCAGGATGTTCTATCCAGAACGGATTCAAAGTGTGGAATAATGAGAAGCCCAACATCTAATGACAAAATTGATAGGATACCACTTTTGAAGAGGGAGATTATAATGAATATGGAAGAGTTGCCTAAACGATCCAGCCGGCGATATGTCGGTAGGGGATTCTTGAGCTCTCGACCGGCAATGTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGCAGTATGTGTAGCCGTCTTTCACCGGGGGAGGGTTAGTGAGTTAGCTGTATCCATTAGAAGGTGCTTGTTTAACTCTTAG 2373 0.4421 MEPLPSLPPPLNNNNMDDSSSIWDLTYLLDFNLDDLPLDPHQPSQPLDFDPPAPPDPHNIPPASPLPANDKVRKRDPRLTCSNFLAGRVPCACPEIDAQLENEGLPGKKRVRTVSAARGSPPTVCCQVPGCEVDITELKGYHRRHRVCLRCANAATVMLDGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSRAEAAHEPLPVAQNEDSTNDGETGKGLDSSNLSCEINEKEVSLDLEDEPVANLNSAPDMQNITNDSVMTFLASGETQVNSGKDVSNLSNSPSYCDNKSAYSSLCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPKNMWINLLEDPMYYVRDLVAPGKFLSARGNALIYLNDMFFRIMKDGTSVTKVKVNMQAPRLHYVHPTYFEAGKPLEFVACGSNLMQPKFRLLVSFSGKYLKCEYCVPSPHNWTGNNMSCAFENQLYKIYVPHTEETLFGPAFIEVENESGLSNFIPVLIGDKEICSEMRTLQQRLDESLHSKQFQSTSGGSICSLCEDFAHRHTSSDLLVDIAWLLKNPTSENFERMMTASQIQRYCYLLDFLICHDSILILEKILPKLVIFTEGLKSNIVVSQTSDVDVTQLLNCMHLARDVINQNHQKGRGIVVHSETEGFRIEKTCTQDSLPSVSRIKSQDVLSRTDSKCGIMRSPTSNDKIDRIPLLKREIIMNMEELPKRSSRRYVGRGFLSSRPAMFVIVSVAVCLAVCVAVFHRGRVSELAVSIRRCLFNS* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1249 790 MobiDBLite consensus disorder prediction 216 234 - -
Amo05g1249 790 ProSiteProfiles Zinc finger SBP-type profile. 123 200 IPR004333 GO:0003677
Amo05g1249 790 SUPERFAMILY SBT domain 124 203 IPR036893 GO:0003677|GO:0005634
Amo05g1249 790 MobiDBLite consensus disorder prediction 36 73 - -
Amo05g1249 790 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 18 788 - -
Amo05g1249 790 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 788 IPR044817 GO:0003677
Amo05g1249 790 Gene3D - 117 187 IPR036893 GO:0003677|GO:0005634
Amo05g1249 790 MobiDBLite consensus disorder prediction 44 64 - -
Amo05g1249 790 Pfam SBP domain 126 200 IPR004333 GO:0003677
Amo05g1249 790 MobiDBLite consensus disorder prediction 190 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1249 Amo-Chr5 17786201 17792091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1249 8 784 SBP-box Gene Family AT5G18830 47.355 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo05g1249 SBP 7.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1249 - - gmx:100776034 1102.04