Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1242 ATGAAAGTGCGCAAGAAGATTTTGAAGAGAAAGGTTTCCCTTCCAAATGAAACCTTGAAAAAGAAAAGAAGGAATAGAGGTAAAGAGAAAAAAAGAAAGAGAACAGGTCCGAGAAGCCCAAGAATTGTGTCAAGCTCTAGAAGAATTGAAGGAGTTCCCCATTTAACAAATGAAGAGATTGAGTTACATGAAGATCGACACCAACTAAGGAAGCCTCATGGTCGAAAGGGTAAGGAAAAAATAGATGAATCTCAACGAAAGAAAGGCGAAAAAAAGAAAATAAGAGGAATACTAAATTTGTACTCACTACTTTTTGTTTACTGCATTGTGGATGGCAAAAGTGAAACTCGGTGTCCTTTGTGTAAGCAGAGATTCAGAACAATTACTAAGCCTGCCAGATCGACTGCAGGAGTTGATTTTAGAGAAGTGGTAGTAGAAGTGCCTGAACGCGACCAGGTTTACCAGCCCACCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGGATGTTATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGCCCTCATGTTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGCAGACCGGATGCTTTGGCATCTTCAAGCTCTCAAGTTCAAGAACGTGTGACTATCCAAGGTCCCAACTCCAAAACTTGCCTTAGACCTCAACATGTATCTTCACCCCGGCATCTTAGTCAAAGGACTGGGCATATTTCATCTGCTAGAGTTTCTGGTAGAAGTGTTGAACTAGCTTCTCCAGGACCTGGAGGAGGGGCACCGACTTTATCAGAAAGGCGCTGGATACTCCGACAGATTCACCAGCTACGTTCGGTATCTGGCAGAACCAATGGTACTTCAGCTACCAATTCAACAAGTAACTTGTATAACTCTCAAACCGATCAAGGCAGGGAAACAAATGCAACACAGCATACAAGGGCACAGGATGCGGGAACATCGTACCACCCATTCTTAGACGAGAGATTATGCAACAACAATATGTCTCCATCAATGCAGAATGCAGACTCTCCTAACAAAATGCCAATGCTAGAAGACCATGGTTCAGGATTCAGCTATGCTTGCCAACAGATCTATTCACGTGTTGCTTATTGCCCCGTACTTGTGGCAAACAACACCTTTCCAACGTGGGTCACTGACAATAGCTTACCCGTTGCTATCAAAGAAGAGAGTAACTTAGAAACAATAAAGCAGCAGTTGAAGTCTATGGTTAAAAGACACCTGTGGAGCTTATCTCGAGATGTTGATTTAGGGCATAATACTCTCAAGGACGTTGCAAGGAGTTCTAAACACACCGTACTAGCTGCATGTGGTCTTGAGCACAAGAAGAGTGAGGTTCGGTCTGTGCCCGCACCAGATGTCTGCCCCCACATTGAACTAATGGCAGGTGGACAAACTAGTTTGATAAAGGTGCGCTCAACTTCTTTGATTCTTTTGTAA 1524 0.4331 MKVRKKILKRKVSLPNETLKKKRRNRGKEKKRKRTGPRSPRIVSSSRRIEGVPHLTNEEIELHEDRHQLRKPHGRKGKEKIDESQRKKGEKKKIRGILNLYSLLFVYCIVDGKSETRCPLCKQRFRTITKPARSTAGVDFREVVVEVPERDQVYQPTEEELRSYIDPYEDVICSECHQGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPDALASSSSQVQERVTIQGPNSKTCLRPQHVSSPRHLSQRTGHISSARVSGRSVELASPGPGGGAPTLSERRWILRQIHQLRSVSGRTNGTSATNSTSNLYNSQTDQGRETNATQHTRAQDAGTSYHPFLDERLCNNNMSPSMQNADSPNKMPMLEDHGSGFSYACQQIYSRVAYCPVLVANNTFPTWVTDNSLPVAIKEESNLETIKQQLKSMVKRHLWSLSRDVDLGHNTLKDVARSSKHTVLAACGLEHKKSEVRSVPAPDVCPHIELMAGGQTSLIKVRSTSLILL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1242 507 MobiDBLite consensus disorder prediction 301 339 - -
Amo05g1242 507 MobiDBLite consensus disorder prediction 52 68 - -
Amo05g1242 507 SMART PHD_3 172 217 IPR001965 -
Amo05g1242 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 225 IPR013083 -
Amo05g1242 507 SUPERFAMILY FYVE/PHD zinc finger 143 218 IPR011011 -
Amo05g1242 507 MobiDBLite consensus disorder prediction 238 269 - -
Amo05g1242 507 Pfam PHD-finger 172 218 IPR019787 -
Amo05g1242 507 MobiDBLite consensus disorder prediction 301 341 - -
Amo05g1242 507 MobiDBLite consensus disorder prediction 1 88 - -
Amo05g1242 507 PANTHER F18C1.6 PROTEIN 9 498 - -
Amo05g1242 507 MobiDBLite consensus disorder prediction 23 38 - -
Amo05g1242 507 ProSiteProfiles Zinc finger PHD-type profile. 170 219 IPR019787 -
Amo05g1242 507 MobiDBLite consensus disorder prediction 238 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1242 Amo-Chr5 17171211 17173311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1242 167 216 C2H2 Transcription Factor Family AT3G01460 46.154 5.80e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo05g1242 PHD 6.4e-09 CL0390