Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1234 ATGTCGTCTAAATCTGCTCCTCATAATAGATTTCCTGATAACGCCACACCGGATAATGCCACGCCGGACGATGCCACACCGGACAATGCCACGCCGGACAATGCCACGCCGGACAATGCTACACCGGACAATGCCACGCCTGATGATGCTGATGGATCAGACTCGAAGAAGCCGTCGTCATCATCACCTCCTCCTCCCAATAATACTCCTGCTACTCCTTCTACTCCTTCTACTACCACTACTCCTCCTCCTCCGGAGGGACGTTCTGGCTCATCACAACATAGCAAACAATTAGCACCGCCGTCTAAAGATTCTTCAAGCTCTACTAACTCAGGATCTATTGCAGCATTCGTTGTGATAGGGATAGTGTTTGTTTTCTTCCTCATTGTGGCCATCATTTGCATTAGAAGGAGGTCCAAAAGGAAGAAACAGAAGATGTACTTTTATGGTGGTGGAGATAAATCTACTGACCAACTAAATCTGAATAATAACTACAGCGGGCAGAGCCAAAGTTACTATGGAGGTAGCCAAAACCAAAACCATGTTGTGAGAATGCAAAACGGTGGTGATAGTGGTGGTTGGGGTTCATCACCCACTCCTCTGATGATGAACAGTGCCGAAATGAGCTCGAATTACTCGACTGGATCTCATTTGCCTCCTCGCCTTTCACTGGGTCTCAACAGCGGCACCTTCAGCTACGAAGAACTAGCTCTGGCCACAAGCAACTTCGCAGAGTCAAATATGATAGGACAAGGTGGATTTGGTTATGTCTACAAAGGTGTCTTGCCTAACGGAAAGGAAGTGGCGGTTAAGACCCTCAAGAGTGGTAGCGGCCAAGGCGAGCGCGAGTTCCAGGCTGAGATTGAGATCATCAGCCGTGTTCATCATCGCCATCTTGTTTCTCTTGTTGGTTACTGCATTGCTGGTGGCCAGAGAATGTTGGTCTATGAATTCATCCCTAATAACACACTGGAACATCATCTTCATGCTAAGGGTCAGCCTACCATGGATTGGCCTACCAGAATGCGCATTGCCATTGGAGCTGCTAAGGGACTTGCTTATCTTCATGAAGATTGTCATCCTCGCATCATCCATCGTGACATCAAAGCTGCCAATGTCCTTATTGATAATAGCTTCGAAGCAAAGGTGGCTGATTTCGGATTGGCTAAGTTGACCACAGATAATAACACTCATGTATCTACTCGTGTCATGGGAACATTCGGGTACTTAGCTCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTATTCTCGTTTGGGGTGATGCTGTTAGAAATCCTAAGTGGGAAGCGCCCTGTGGATCTCTCAGGTGCCATGGATGATAGCTTAGTTGACTGGGCGCGGCCACTACTGACACGTGGGTTGGAGGAAGATGGCAACTTTGGAGAGTTGGTGGATCCATTTTTGGAAGGAAACTACAACAAACAAGAAATGACAAGGATGGCAGCTTGCGCTTCTTCCAGCATCCGTCACTCTGCTAAGAAGCGTCCAAGAATGAGTCAGATTGTAAGGGCATTGGAAGGAGATGTATCATTGGATGACTTGAAGGATGGGGGGGCTAAGCCGCCGTCTGGCAGCAATTACGCGGCTTCAAGTGGTTACAACCCTGCAACTGCGAGCTCTGGCTATGACACAATGCAATACAATGCTGATATGGCAAAGTTCAGACAAGCAGTGTTTGCAAGCCAGGAATATAGCATGAGTAGTGGTGAACAAAGCTTTAGCAAATAA 1761 0.4725 MSSKSAPHNRFPDNATPDNATPDDATPDNATPDNATPDNATPDNATPDDADGSDSKKPSSSSPPPPNNTPATPSTPSTTTTPPPPEGRSGSSQHSKQLAPPSKDSSSSTNSGSIAAFVVIGIVFVFFLIVAIICIRRRSKRKKQKMYFYGGGDKSTDQLNLNNNYSGQSQSYYGGSQNQNHVVRMQNGGDSGGWGSSPTPLMMNSAEMSSNYSTGSHLPPRLSLGLNSGTFSYEELALATSNFAESNMIGQGGFGYVYKGVLPNGKEVAVKTLKSGSGQGEREFQAEIEIISRVHHRHLVSLVGYCIAGGQRMLVYEFIPNNTLEHHLHAKGQPTMDWPTRMRIAIGAAKGLAYLHEDCHPRIIHRDIKAANVLIDNSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEILSGKRPVDLSGAMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNYNKQEMTRMAACASSSIRHSAKKRPRMSQIVRALEGDVSLDDLKDGGAKPPSGSNYAASSGYNPATASSGYDTMQYNADMAKFRQAVFASQEYSMSSGEQSFSK* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1234 586 MobiDBLite consensus disorder prediction 84 110 - -
Amo05g1234 586 ProSiteProfiles Protein kinase domain profile. 243 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1234 586 Gene3D Phosphorylase Kinase; domain 1 209 318 - -
Amo05g1234 586 MobiDBLite consensus disorder prediction 1 110 - -
Amo05g1234 586 Pfam Protein tyrosine and serine/threonine kinase 247 515 IPR001245 GO:0004672|GO:0006468
Amo05g1234 586 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 7 578 - -
Amo05g1234 586 SUPERFAMILY Protein kinase-like (PK-like) 222 516 IPR011009 -
Amo05g1234 586 MobiDBLite consensus disorder prediction 59 83 - -
Amo05g1234 586 Gene3D Transferase(Phosphotransferase) domain 1 319 526 - -
Amo05g1234 586 MobiDBLite consensus disorder prediction 523 544 - -
Amo05g1234 586 MobiDBLite consensus disorder prediction 1 48 - -
Amo05g1234 586 ProSitePatterns Protein kinases ATP-binding region signature. 249 271 IPR017441 GO:0005524
Amo05g1234 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Amo05g1234 586 PANTHER RECEPTOR-LIKE KINASE 7 578 - -
Amo05g1234 586 SMART serkin_6 243 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1234 Amo-Chr5 17110745 17113811 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1234 60 583 Trihelix Transcription Factor Family AT1G70460 47.290 1.46e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo05g1234 PK_Tyr_Ser-Thr 5.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1234 - - ahf:112800691 664.84