Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1229 ATGCTGCGCTTTTCTGATCTTGTTTGTATGCATGTAAATAGGTTTGCACCATCACTTCCTGCAATTGTCTACCATGGCAGCTGGCAAGAGAGAGATGTAATCCGACGGAAACATATGCCTGTAACCATTGGCCCCAAATTCCCCATATTAATAACTTCATATGAGGTTGCTTTAAATGATGCTAGAAAACATTTAAGGGTTTACCCTTGGAAGTATCTTGTAGTTGATGAGGGACACAGACTCAAAAATTCAAAGTGTAAATTAGTGAAGGAGTTGAAATGGATTAATGCACAGAACAAGCTACTTTTATCAGGGACTCCTCTTCAGAATGACTTGGCAGAGCTATGGTCCTTGTTGAACTTCATTTTACCGGATATTTTTGCTTCGCTTGAAGAATTTAAGTCATGGTTTAATCTATCAGGAAAGTGCAACAATGGAGCAACCAAGGAAGAATTAGAAGAGACAAGAAGAGGCCAAGTGGTGACTAAGCTTCATGCCATACTTCGACCCTTTCTCCTGCGTAGAATGAAGTCTGATGTTGAGATTTCATTGCCAAGAAAGAAGGAGATCATTATCTATGCAAATATGACTGAGCATCAGAAGAAATTGCAGGATCATTTAGTCAACAAGACGTTGGAGAACTATTTTGCGGACATGAAGTCAATGGGGCGTGGAATAAAGACGCTTAATAATTTGGTTATTCAACTTAGGAAAGTCTGTAACCATCCTGACCTCTTAGAGTCTGCCTTTGATGGTTCATGGCTTTATCCTCCTGTGAATGAGATAGTTGAACAATGTGGGAAATTTCGTTTGCTTGAACGGCTGTTGGAAAGGTTATTTGCAAGGAAACACAAAGTTTTGATATTCAGTCAGTGGACCAAAGTGTTAGACATACTGGATTACTATTTGAGTGAGAAGGGCTTTGAAGTTTGTAGGATTGATGGTAGTGTGAAATTGGATGAAAGGAAACGACAGATCCATGAATTCAATGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGACTAGGAATTAACCTTACTGCAGCTGACACATGCATTCTTTATGACAGTGATTGGAATCCTCAGGTAGACTTGCAGGCCATGGATAGGTGTCACAGAATTGGTCAAACAAAACCAGTTCATGTTTACAGGCTCTCGACTGCTCAATCTGTAGAGGGTCGCATGCTGAAAAGAGCTTTTAGCAAGTTGAAACTTGAACATGTGGTGATTGCAAAAGGACATTTTCATCAAGATCGCACAATGCTCAAAGTGGATGAAATGGAGGAACAAGATATTATGGCATTGCTTCGGGACGAGGATGCAGCTGAAGATAAATTGATACAAACAGATATTAGTGATGAGGATTTGGATAAGCTGTTGGATCGCAGTGATCTTATTGCTCAAGATCCAAATGATGACGACAAGGAACTCAAAGTTCCATGCGATGCATTTCCTCTTAAAGGACCTGGGTGGGAGGTTGTAATTCCGACGGCAACTGGGGGCATGCTTTCTACTCTTAACAGTTAA 1545 0.4039 MLRFSDLVCMHVNRFAPSLPAIVYHGSWQERDVIRRKHMPVTIGPKFPILITSYEVALNDARKHLRVYPWKYLVVDEGHRLKNSKCKLVKELKWINAQNKLLLSGTPLQNDLAELWSLLNFILPDIFASLEEFKSWFNLSGKCNNGATKEELEETRRGQVVTKLHAILRPFLLRRMKSDVEISLPRKKEIIIYANMTEHQKKLQDHLVNKTLENYFADMKSMGRGIKTLNNLVIQLRKVCNHPDLLESAFDGSWLYPPVNEIVEQCGKFRLLERLLERLFARKHKVLIFSQWTKVLDILDYYLSEKGFEVCRIDGSVKLDERKRQIHEFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVIAKGHFHQDRTMLKVDEMEEQDIMALLRDEDAAEDKLIQTDISDEDLDKLLDRSDLIAQDPNDDDKELKVPCDAFPLKGPGWEVVIPTATGGMLSTLNS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1229 514 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 11 513 - -
Amo05g1229 514 CDD SF2_C_SNF 257 391 - -
Amo05g1229 514 Pfam Helicase conserved C-terminal domain 271 381 IPR001650 -
Amo05g1229 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 175 IPR027417 -
Amo05g1229 514 PANTHER SNF2/RAD54 HELICASE FAMILY 11 513 - -
Amo05g1229 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 471 IPR027417 -
Amo05g1229 514 Pfam SNF2-related domain 12 246 IPR000330 GO:0005524|GO:0140658
Amo05g1229 514 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 434 IPR001650 -
Amo05g1229 514 SMART helicmild6 297 381 IPR001650 -
Amo05g1229 514 Gene3D - 9 176 IPR038718 -
Amo05g1229 514 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 125 IPR014001 -
Amo05g1229 514 Gene3D - 181 484 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1229 Amo-Chr5 17071428 17074844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1229 19 442 RAD5 or RAD16-like Gene Family AT5G05130 24.952 4.58e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo05g1229 SNF2_N 1.1e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1229 K19001 - gmx:100777687 825.854