Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1215 ATGTCGTTCAAAAGCATAGTACGCGAACTCAAGGAGATGAGAGATGGGATTGGTAGCTTATCGAGGCGGAGCGCAGAAAGCAAGCATTGGCACAGTAGAGTAAAGTCACATGTTGTTCCTGATGTCACTCTAAATCCACTTGAACCTGTTCAACAGGGGCAGTGGGCACATCTACCACCTGAGTTACTTCTGGACATAATTCATAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGCACCGTTGTTGTGTCGTGTGCTTCAGTATGTAAATCATGGAGGGCTGTTACAAAAGAGATTGTCAATACTCCTGAGCAGTGCGGAAGGCTCACGTTTCCTATTTCATTGAAACAGCCCGGTCCTCGTGAGTCACCAATTCAGTGCTTTATCAGGAGAAACAGAGAAACTTCAACATATTTATTGTACTTCGGTCTTGTGCCATCGGAGAATGGGACTGATAAGTTGTTATTAGCTGCTAAAAAGATAAGAAGGGCAACAGGCATAGACTTTGTCATATCTTTGGTTGCAAATGATTTTTCTCGGTCCAGCAACACATATGTTGGTAAACTAAGGTCTAATTTTTTGGGAACCAAGTTCACTATCTGCGACAACCAATCTCCCCATCAAGCTGGAACTCAGCCAAATGGTCGTTCTAGTAAGAGATTCCACACTAAGCAGGCGTCTCCGAGGGTTTCAGCAGGTAACTACACCGTTGGCACCATTGCCTATGAGCTTAATGTCCTACGCACGAGAGGGCCACGGAGGATGAACTGTACCATGAACTCCATACCTGTGTCAGCTATCCAAGAAGGAGGCACCGCCCCAACCCCGACATCTCTTCCTCAGATAATTGATGAGCAATTCCCTTTGTCGCCATCACTGAAAGGAAAAGCTCCAATAATAGACGTAAGCTCCACAAGCCTCTTGGAGATGCCAGTGCAAAGCCAAGGCTTGGTTGAGCCCCTAGTACTTAAAAACAAGGCCCCCAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTTAAGGGTCGTGTTACGGTGGCGTCTGTTAAGAACTTCCAACTTGTTGCCGCTGTTGATCCATCTCATAATTTGTCCACCGCAGAGCAAGAAAAGGTAATTTTGCAGTTTGGAAAGATTGGGAAAGACATATTTACCATGGATTATCGATATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACTAAACCAGCCTGTGAATGA 1245 0.4594 MSFKSIVRELKEMRDGIGSLSRRSAESKHWHSRVKSHVVPDVTLNPLEPVQQGQWAHLPPELLLDIIHRVEESETSWPARTVVVSCASVCKSWRAVTKEIVNTPEQCGRLTFPISLKQPGPRESPIQCFIRRNRETSTYLLYFGLVPSENGTDKLLLAAKKIRRATGIDFVISLVANDFSRSSNTYVGKLRSNFLGTKFTICDNQSPHQAGTQPNGRSSKRFHTKQASPRVSAGNYTVGTIAYELNVLRTRGPRRMNCTMNSIPVSAIQEGGTAPTPTSLPQIIDEQFPLSPSLKGKAPIIDVSSTSLLEMPVQSQGLVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNLSTAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1215 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Amo05g1215 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Amo05g1215 414 Gene3D - 48 102 - -
Amo05g1215 414 PANTHER TUBBY-RELATED 1 414 - -
Amo05g1215 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Amo05g1215 414 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Amo05g1215 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Amo05g1215 414 MobiDBLite consensus disorder prediction 205 229 - -
Amo05g1215 414 Pfam Tub family 116 409 IPR000007 -
Amo05g1215 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Amo05g1215 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Amo05g1215 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Amo05g1215 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Amo05g1215 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Amo05g1215 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Amo05g1215 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Amo05g1215 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Amo05g1215 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1215 Amo-Chr5 16784320 16787455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1215 1 414 TUB Transcription Factor Family AT2G18280 65.385 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo05g1215 Tub 2e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1215 K19600 - gmx:100798958 693.73