Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1214 ATGGGAACTGATAGTGGTGAAGAAGCGGAGTCATTACCAAATCCGCGCTCCTTCAAGGTGCATAGTAAACTGTGCGTGGAACTCATGAAAATACTAGCAAGAGTTTTGAGGATATTTCCGGCAATAGAGGAGGCTCGGCCTCGAAGCTCGTCAGGAATAGAGTCTCTGTGTTTGCTGAACAATGCAATCGATAAAGCCAAACTACTACTGCAGCATTGCTCTGATTGCAGCAAACTCTACCTGGCTCTGACAGGGAATGCAATACTTCAAAGATGCCAAAAGGCAAGAAAATCATTATTGCAAAGCTTGATCCAGATTCAGGGTATGGTTCCAGTTATTTTAGCTGCAGAGGTTTCTGGAATAATCGATGATCTTGAGTGTGCCACATTTGTCTTAGACTCTGCCGAAGAAGAGGCTGGGAAGGTTGTTAAGGAGTTGCTTGAGCAAGATACAGATACAATGGATGGTTCTGCAGTAAAAGCTCTTCAGTTTGCAGCACCAAGACTTAACATTACATCCCAAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCGAGATAAAATTGGAACCAATGACCAGAAAAAGAAGGCCATTTTGAAATTTCTTTGGTATATACTGGACAAGCATGGAAATCACATCATTGGGGAAGAAATGGAGAAGGTCTATTCCAATAATGATGAACCAATGGCCACTGAGAACTCTAGTCGCCATTCTCAACAAAGGCATCAACCTGAGTCTGATCCATGCTTGCACTATGACCAATATAGAAATCAGACTGATGAGTTTGGTAGAGCTACACCACTTGAGGAGTATAAGTGTCCAATATCGTCAAGATTGATGTATGATCCTGTTGTCATTGCATCTGGTGTTACATATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGATACATGCCCGAAAACTAAAAAGAAACTAGTGCATATGGGAATGACTCCTAATATTGCTATGAAGGACTTAATATCAAAATGGTGCAGAAACAATGGAGTCTCCATTTCTGACCCAAACAGGCTAGTAGGAGGTTTTCACTCTTGGGAAGCTTCTATGACTTCCATCAAGAGTTTTGGAAGTTACATAAATGATTTTAACTTGCCACTGGATCTTAGTAACATGTCTCTTGGATCATTGGATACTAGTTACAATTCAGATGTCTTGCATTCTAAGACCACTCGTGAGTCAAATTTGAGGTCAATAATGACTAATGATGATTCTCACAAACGTCAAGCTCAAGAACAGATGCGTGAAGCAAATTTGCAGCTCTTGTCCGAACTGCATGATCTCCAATGGGATTCTCAATGCCAGGTCATTGAAGAAGTGAAAGAAAATTTGAAAAGCAATTACCAAGCTTTTTCTTCTGTATCACCTCAGAATTTCACTGAACCACTCATCAGATTTCTGAACAGTGCTTATGATCTGCATGATGTAAAAGCTCTCAGAGCTGGAACTCAGCTGCTGTTGGAATTTGTCAACAACTGCAGAAATGGTCTGAGTAATTTCAGTGAAGATGTATTCACACTGTTGGCCAATTTTCTTGATTCAGAAGTGACAGGAGAAGCTCTTGCCGTAATGGAAGAACTCTCTAGTTATTTGCATGGAAAAGCTAAAATAGCAGCATCCAATGCACTCACTTCTATTCTAAATATACTTAATTCTGATAACAAAGAGTTCCAACGACAAGCCATTGTAATATTGTATAATTTATCCTTCAATGGTGAAGTTTGTCCCCTCATGCTATCTCTCAAGTGCATCCCAACATTGCTTCCATTTTTCAAAGACAGGTCCCTTTTGAGATACTGTATAGTTATATTGAAAAATCTTTGTGACACTGAAGAGGGTAGGAATTCTGCTGTTGAAACCAAGGGTTTCATAGCTTCTGTTGCTGAAATACTCGAAACAGGAAGCAATGAGGAAAAAGAACATGCACTTGAAGTCCTAATTTCTCTATGTTCTCAACGCATGGACTATTGTAGATTGGTTATGAGTCAGTATGTTATCTCTCATCTTTTCTATATATCCAAGAATGGAAGCGACAAAGGACAGGCAACTGCATTGGAACTGCTCCGTCTTCTGCAAGATGTAGAAGATGTGGAAGATGATGATTCCCTTGAACCAAATCTCAACAACACCTCCGGAGATTCAAACAGCCAACCTCAAGAGAGGAGATCATCAAAGGGATCAAAATTTCTGAAGAAACTACCCTTCTTAAAAACCAAGAGATGA 2256 0.398 MGTDSGEEAESLPNPRSFKVHSKLCVELMKILARVLRIFPAIEEARPRSSSGIESLCLLNNAIDKAKLLLQHCSDCSKLYLALTGNAILQRCQKARKSLLQSLIQIQGMVPVILAAEVSGIIDDLECATFVLDSAEEEAGKVVKELLEQDTDTMDGSAVKALQFAAPRLNITSQKAILIEKRSIKKLRDKIGTNDQKKKAILKFLWYILDKHGNHIIGEEMEKVYSNNDEPMATENSSRHSQQRHQPESDPCLHYDQYRNQTDEFGRATPLEEYKCPISSRLMYDPVVIASGVTYERMWIKKWFDEGNDTCPKTKKKLVHMGMTPNIAMKDLISKWCRNNGVSISDPNRLVGGFHSWEASMTSIKSFGSYINDFNLPLDLSNMSLGSLDTSYNSDVLHSKTTRESNLRSIMTNDDSHKRQAQEQMREANLQLLSELHDLQWDSQCQVIEEVKENLKSNYQAFSSVSPQNFTEPLIRFLNSAYDLHDVKALRAGTQLLLEFVNNCRNGLSNFSEDVFTLLANFLDSEVTGEALAVMEELSSYLHGKAKIAASNALTSILNILNSDNKEFQRQAIVILYNLSFNGEVCPLMLSLKCIPTLLPFFKDRSLLRYCIVILKNLCDTEEGRNSAVETKGFIASVAEILETGSNEEKEHALEVLISLCSQRMDYCRLVMSQYVISHLFYISKNGSDKGQATALELLRLLQDVEDVEDDDSLEPNLNNTSGDSNSQPQERRSSKGSKFLKKLPFLKTKR* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1214 751 PANTHER U BOX DOMAIN-CONTAINING 2 736 - -
Amo05g1214 751 SUPERFAMILY RING/U-box 263 345 - -
Amo05g1214 751 CDD RING-Ubox_PUB 274 316 IPR045210 -
Amo05g1214 751 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Amo05g1214 751 MobiDBLite consensus disorder prediction 709 751 - -
Amo05g1214 751 Gene3D - 412 715 IPR011989 -
Amo05g1214 751 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 736 - -
Amo05g1214 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Amo05g1214 751 MobiDBLite consensus disorder prediction 229 252 - -
Amo05g1214 751 SUPERFAMILY ARM repeat 432 703 IPR016024 -
Amo05g1214 751 MobiDBLite consensus disorder prediction 715 734 - -
Amo05g1214 751 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Amo05g1214 751 Pfam U-box domain 272 340 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1214 Amo-Chr5 16764130 16769251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1214 15 714 U-box Gene Family AT4G36550 37.746 6.58e-146 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1214 - - gmx:100791627 949.888