Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1208 ATGGAAAGAAGAGGGGAAGAGGATAAGGAATTAGAGATGGCAACAATAACAGCAACAACAACAACAACCACTTTGGGTAGTTATAGTGTTGTTGTTCCAAACAACAACAATAACAGGGATTCTTCTTCTTCAACTTCTTCAAAGTTGTCTTCTCCAACTGTGGTTGGAGCTTCTGAAACAACTCACCAACCATCTCAAACTCACTCATTAGTCTTCCACCACCATGATCCTCCAAACCACAACCACCACCATCAACATCATCTCTATCCTCATCTTCAGCCACCCAATCAACAATCTCTAAGACCAACCTCAGATCCAGATCTAACCTCGTCTCCTATTGCCACAACAGCACCACAGCCGCCGCCACCACCACCACAAGCAGCTGCAACAACCACCACAGCATTAGCAAGGTACAGAGAATGTCTGAGAAACCACGCAGCCAGCATGGGGAGCCATGTGGTGGATGGTTGTGGAGAGTTCATGCCAAGCGGAGAAGAAGGCACCCCGGAATCACTCCGGTGCGCCGCCTGTGAGTGCCACCGTAACTTCCACCGTAGAGAGGTTGAAGGCTCCGCTCCTCAACAGCATCACAACTATTACCCCAACAACAACAACAACAAGCACAACGGTCACAGCACTCATCATCTTCTTCAGTTCCACACAGCACCACCATCTTCATCCCTTCATCATCAACGATTCTCTCATGCTATTGCTGCTGCTGCTCCACCATCGGTTCAGCCGGTGATGATGGCGTTCGGAGGAGGAGGAGGAGGAGCGGCGGAATCCTCTAGCGAAGATCTGAACATGTTCCATCATCAGTCAAACGCATTAGGAGGGCAATTCTCAGTGCAGCAAGCATCAGCGTCAAAGAAGAGGTTCAGGACAAAGTTCACACAGCAGCAGAAAGATAGAATGATGGAGTTCGCTGAGAAGCTTGGGTGGAAGATTCAGAAACACGATGAGCAAGAAGTGCAGCAGTTTTGTTCTCAAGTTGGTGTTAAGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCTATCAAGAAACAACAGCAGCATCACACGTAA 1074 0.4823 MERRGEEDKELEMATITATTTTTTLGSYSVVVPNNNNNRDSSSSTSSKLSSPTVVGASETTHQPSQTHSLVFHHHDPPNHNHHHQHHLYPHLQPPNQQSLRPTSDPDLTSSPIATTAPQPPPPPPQAAATTTTALARYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLRCAACECHRNFHRREVEGSAPQQHHNYYPNNNNNKHNGHSTHHLLQFHTAPPSSSLHHQRFSHAIAAAAPPSVQPVMMAFGGGGGGAAESSSEDLNMFHHQSNALGGQFSVQQASASKKRFRTKFTQQQKDRMMEFAEKLGWKIQKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQAIKKQQQHHT* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1208 357 MobiDBLite consensus disorder prediction 195 210 - -
Amo05g1208 357 Gene3D - 279 351 - -
Amo05g1208 357 MobiDBLite consensus disorder prediction 91 114 - -
Amo05g1208 357 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 138 187 IPR006456 -
Amo05g1208 357 ProSiteProfiles 'Homeobox' domain profile. 288 352 IPR001356 GO:0003677
Amo05g1208 357 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 290 347 IPR006455 -
Amo05g1208 357 MobiDBLite consensus disorder prediction 17 72 - -
Amo05g1208 357 MobiDBLite consensus disorder prediction 17 131 - -
Amo05g1208 357 Pfam ZF-HD protein dimerisation region 137 188 IPR006456 -
Amo05g1208 357 SUPERFAMILY Homeodomain-like 284 351 IPR009057 -
Amo05g1208 357 MobiDBLite consensus disorder prediction 190 210 - -
Amo05g1208 357 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 73 352 - -
Amo05g1208 357 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 137 188 IPR006456 -
Amo05g1208 357 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 73 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1208 Amo-Chr5 16660395 16663427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1208 110 352 ZF-HD Transcription Factor Family AT2G18350 50.204 3.97e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo05g1208 ZF-HD_dimer 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1208 - - gmx:100776691 306.99