Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1203 ATGATGCATCATCGATGTTGCAGCGGAACTACTCATCAGGGGCACGTCATGGGTCCCTGCACATGTGCTATGTTCCATGGCCAAACAACCACCAATTCCTTCTCCATGCTATTCTCCATGCCCAACCACCACAACAACCCTTACGATCAACCTGATGATATCATTTACTCCTCCTCTTCTTCATCCTCCGTCGACTGCACCCTCTCCCTCGGTACCCCTTCCACCCGTTTCACCGAAGACGAAGAGAAGCGTACCCGCCATGAACGTCGTTCCTCCGTCTCCAACTTCTGCTGGGATTTGCTACAATCCACCAAACACAACCACTCTCAAACCAAGTCCTCCTCAAACCGCCCCTCCAACAACGCCGACCCTCTCCTCGCTCGTCGTTGCGCCAACTGTGACACCACTTCTACACCGCTCTGGAGGAATGGCCCCCGTGGCCCAAAGTCTCTATGCAATGCCTGTGGCATACGGTTCAAGAAAGAGGAGAGGAGGGCCAGTGCAGCAGCCGCCACCACCGCCGCGGCTTCTGGTGGCGTGATGGATTCATCGCAGATGTACAGCCACCACAACAGTAACTCGTGGTACGCGCATTCGCAGAGCCAGAAGATGGCCGCGGCGGCGATGGGCAGCGAGTTCCGTTTCGTGGACGACGGTGATGTCCGGGACTCCGAAAACGGCATTCCGTTCCTGTCGTGGAGGCTCAACGTTACTGACAGAACAAGCCTCGTTCACGACTTCACAAGATGA 750 0.5587 MMHHRCCSGTTHQGHVMGPCTCAMFHGQTTTNSFSMLFSMPNHHNNPYDQPDDIIYSSSSSSSVDCTLSLGTPSTRFTEDEEKRTRHERRSSVSNFCWDLLQSTKHNHSQTKSSSNRPSNNADPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATTAAASGGVMDSSQMYSHHNSNSWYAHSQSQKMAAAAMGSEFRFVDDGDVRDSENGIPFLSWRLNVTDRTSLVHDFTR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1203 249 CDD ZnF_GATA 129 161 IPR000679 GO:0006355|GO:0043565
Amo05g1203 249 SMART GATA_3 124 179 IPR000679 GO:0006355|GO:0043565
Amo05g1203 249 ProSitePatterns GATA-type zinc finger domain. 130 155 IPR000679 GO:0006355|GO:0043565
Amo05g1203 249 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 166 - -
Amo05g1203 249 Pfam GATA zinc finger 130 164 IPR000679 GO:0006355|GO:0043565
Amo05g1203 249 Gene3D - 126 203 IPR013088 GO:0006355|GO:0008270
Amo05g1203 249 ProSiteProfiles GATA-type zinc finger domain profile. 124 160 IPR000679 GO:0006355|GO:0043565
Amo05g1203 249 PANTHER GATA TRANSCRIPTION FACTOR 18 2 248 IPR044272 GO:0003700|GO:0009908
Amo05g1203 249 PANTHER GATA TRANSCRIPTION FACTOR 18 2 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1203 Amo-Chr5 16533516 16535229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1203 21 249 C2C2-Gata Transcription Factor Family AT3G50870 45.296 4.11e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo05g1203 GATA 6.1e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1203 - - gmx:100790571 347.821