Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1190 ATGGCGCCCAAGGATGAAGTGAAGGAAGAAGATCCTGTTGAGTCTCCCACTTCTGTCCTTGAAGACGAGGATGCTTGTGGTGTGAAAGTTGAAGTTGAGTCTGATGAAGTGCAGTGCGAGGAGGCACCTGAGCTTACTGATACTCAGTTTAACAAATTGGATGAGCTTTTAACTCAAACAAAGCTCTATTCCGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTACTGGGGGCGAGCAACAGAGTGAGCCCGAAGAGAAGAAAGTGCGAGGCCGGGCTTCTAAAAGGAAAGCAGCTTCACAGTGCAATACTACGAGGGCCAAAAGGGCAGTTGTTGCTATGCTTGCAAGATCAAAAGAAAGTGTGAAGATAGAAGATATTAACATGACTGAGGAGGAAAGAACTGAGAAAGAACAGAAGGAGCTTATGCCTTTACTCACGGGCGGAAAATTGAAGTCTTATCAGCTGAAAGGTGTAAAGTGGTTGATTTCACTCTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACCATTCAAACAATTGGGTTTCTTTCACATCTAATAGGGAAAGGTCTGCATGGGCCATACATGATAATTGCTCCTCTAAGCACCCTCTCAAATTGGAAAAATGAGATTTCTAGGTTTGCACCATCACTTCCTGCAATTGTCTACCATGGCAGCTGGCAAGAGAGAGATGTAATCCGACGGAAACATATGCCTGTAACCATTGGCCCCAAATTCCCCATATTAATAACTTCATATGAGGTTGCTTTAAATGATGCTAGAAAACATTTAAGGGTTTACCCTTGGAAGTATCTTGTAGTTGATGAGGGACACCGGCTCAAAAACTCAAAGTGTAAATTAGTGAAGGAGTTGAAATGGATTAATGCACAGAACAAGCTTCTTCTATCAGGGACTCCTCTTCAGAATGACTTGGCAGAGCTATGGTCCTTGTTGAACTTCATTTTACCGGATATTTTTGCTTCGCTTGAAGAATTTAAGTCATGGTTTAATCTATCAGGAAAGTGCAACAATGGAGCAACCAAGGAAGAATTAGAAGAGACAAGAAGAGGCCAAGTGGTGACTAAGCTTCATGCCATACTTCGTCCCTTTCTCCTGCGTAGAATGAAGTCTGATGTTGAGATTTCATTGCCAAGAAAGAAGGAGATCATTATCTATGCAAATATGACTGAGCATCAGAAGAAATTGCAGGATCATTTAGTCAACAAGACATTGGAGAACTATTTTGCGGACATGAAGTCAATGGGACGTGGAATAAAGACGCTTAATAATTTGGTTATTCAACTTAGGAAAGTCTGTAACCATCCTGACCTCTTAGAGTCTGCCTTTGATGGTTCATGGCTTTATCCTCCTGTGAATGAGATAGTTGAACAATGTGGGAAATTTCGTTTGCTTGATCGGCTGTTGGAAAGGTTATTTGCAAGGAAACACAAAGTTTTGATATTCAGTCAGTGGACCAAAGTGTTAGATATACTGGATTACTATTTGAGTGAGAAGGGCTTTGAAGTTTGTAGGATTGATGGTCATGTGAAATTGGATGAAAGGAAACGACAGATCCATGAATTCAATGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGACTAGGAATTAACCTTACTGCAGCTGACACATGCATTCTTTATGACAGTGATTGGAATCCTCAGGTAGACTTGCAGGCCATGGATAGATGTCACAGAATTGGTCAAACAAAACCAGTTCATGTTTACAGGCTCTCGACTGCTCAATCTGTAGAGGGTCGCATGCTGAAAAGAGCTTTTAGCAAGTTGAAACTTGAACATGTGGTGATTGCGAAAGGACATTTTCATCAAGATCGCACAATGCTCAAAGTGGATGAAATGGAGGAACAAGATATTATGGCATTGCTTCGGGATGAGGATGCAGCTGAAGATAAATTGATACAAACAGATATTAGTGATGAGGATTTGGATAAGCTGTTGGATCGCAGTGATCTTATTGCTCAGGATCCAAATGATGACGACAAGGAACTCAAAGTTCCATGCGATGCATTTCCTCTTAAAGGACCTGGGTGGGAGGTTGTAATTCCGACGGCAACTGGGGGCATGCTTTCTACTCTTAACAGTTAA 2166 0.4164 MAPKDEVKEEDPVESPTSVLEDEDACGVKVEVESDEVQCEEAPELTDTQFNKLDELLTQTKLYSEFLLEKMDDITLTGGEQQSEPEEKKVRGRASKRKAASQCNTTRAKRAVVAMLARSKESVKIEDINMTEEERTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLIGKGLHGPYMIIAPLSTLSNWKNEISRFAPSLPAIVYHGSWQERDVIRRKHMPVTIGPKFPILITSYEVALNDARKHLRVYPWKYLVVDEGHRLKNSKCKLVKELKWINAQNKLLLSGTPLQNDLAELWSLLNFILPDIFASLEEFKSWFNLSGKCNNGATKEELEETRRGQVVTKLHAILRPFLLRRMKSDVEISLPRKKEIIIYANMTEHQKKLQDHLVNKTLENYFADMKSMGRGIKTLNNLVIQLRKVCNHPDLLESAFDGSWLYPPVNEIVEQCGKFRLLDRLLERLFARKHKVLIFSQWTKVLDILDYYLSEKGFEVCRIDGHVKLDERKRQIHEFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVIAKGHFHQDRTMLKVDEMEEQDIMALLRDEDAAEDKLIQTDISDEDLDKLLDRSDLIAQDPNDDDKELKVPCDAFPLKGPGWEVVIPTATGGMLSTLNS* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1190 721 Gene3D - 388 691 IPR027417 -
Amo05g1190 721 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 478 641 IPR001650 -
Amo05g1190 721 PANTHER BNAC07G16550D PROTEIN 38 720 - -
Amo05g1190 721 SMART helicmild6 504 588 IPR001650 -
Amo05g1190 721 MobiDBLite consensus disorder prediction 1 25 - -
Amo05g1190 721 MobiDBLite consensus disorder prediction 1 15 - -
Amo05g1190 721 CDD SF2_C_SNF 464 598 - -
Amo05g1190 721 Gene3D - 153 383 IPR038718 -
Amo05g1190 721 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 332 IPR014001 -
Amo05g1190 721 Pfam Helicase conserved C-terminal domain 477 588 IPR001650 -
Amo05g1190 721 Pfam SNF2-related domain 155 452 IPR000330 GO:0005524|GO:0140658
Amo05g1190 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 678 IPR027417 -
Amo05g1190 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 382 IPR027417 -
Amo05g1190 721 PANTHER SNF2/RAD54 HELICASE FAMILY 38 720 - -
Amo05g1190 721 MobiDBLite consensus disorder prediction 77 103 - -
Amo05g1190 721 SMART ultradead3 148 343 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1190 Amo-Chr5 16276496 16281273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1190 100 609 RAD5 or RAD16-like Gene Family AT1G02670 26.425 6.61e-41 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo05g1190 SNF2_N 6.4e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1190 K19001 - gmx:100777687 1125.54