Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1188 ATGTCTTCCTCCAATTCTTCAACACTCTCACCACCCTCTGACGATGATACTCCCTCTTCTGATCAGAGCCCACCATCACCCTCATCGTCATCATCCTCGCCACCATCCTCGTCCTCCCAAGATGATGATGATTCTTCATCATCATCGTCACCACCACCATCACCGCCATCACCGCCCCCACCCTCCCAAGATTCCTCCTCCCCGTCATCATCATCACCTCCAGCGCCGTTACCACCCACGCCAGCCTCCCAAGATTCCTCTCCTCCTGCTACCCGACCTCCAGGATCATCCTCCGGCGAGGCATTATTACCGTCTCCTCCAGGAACCTCACCATCAGGGTCTAAGGGTCTTGGCAATCTCTTCAGTGATGATTTGGGACACATTGTAGCATACGTTTCAATAGGAGTTTTTTTTCTTATCCTTCTCATTGTTGCCATTGTTTGCATAAGAAGAAGGTCCAAAAAGAAGAAGCAGCAACAACAACAGAAGTTGTACTACTATGGTGGAGATGCACCTGATCAACAAAAAACTAACTACTACTACAACAACAACAATGGTGGGAAGAATCAAAATTACTATGGAGGAGGTGGTGGTCCAGCAAATCAAGAACATGTGGTGCGGATGCCAAATGGAATGATCGGAATGGGAATGGTTCCTGGTCCTAACGCCGGTGTTGGTGCTGCTTGGGGTGCACAGCAACCTCCTCAGATGATGATGTCAAACGGCTCAGACTTGAGCTCGAATTTCTCGATGGGGCCTCCGCCTCTGCCTCCTCCGTCACCGGGTATTACATTAGGCCTCAAGGCTGGCACCTTCACCTATGAAGAACTCGCAGCAGCAACAGGAAACTTTGCAGATGCAAACATGATAGGCCAAGGTGGATTCGGTTACGTCTACAAGGGAGTCTTCCCTAACGGAAAGGAGGTGGCCGTTAAGACTCTCAAGGCCGGTAGCGGTCAAGGCGAGCGCGAGTTCCAGGCTGAGATTGAGATCATCAGCCGTGTTCATCATCGCCACCTTGTTTCTCTTGTTGGTTACTGCATTGCCGGTGGCCAGAGAATGTTGGTCTATGAATTCATCTCTAATAACACCTTGGAATATCACCTTCATGGTAAGGACCTTCCTACCATGGATTGGCCTACCAGATTGCGCATTGCCATTGGAGCTGCTAAGGGACTTGCTTATCTTCATGAAGATTGTCATCCTCGCATCATCCATCGTGACATCAAAGCTGCCAATGTCCTTATTGATAGTAGCTTCGAAGCAAAGGTGGCTGATTTCGGATTGGCTAAGCTGACGACAGATAATAACACTCATGTTTCAACTCGTGTCATGGGAACATTCGGGTACTTAGCTCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTATTCTCGTTTGGAGTGATGCTATTAGAAATCATAACCGGGAAGCGCCCTGTGGATCTCTCAGGTGCCATGGATGATAGCTTAGTTGACTGGGCGCGGCCACTACTGATACGTGGGTTGGAGGAAGACGGCAACTTTGGAGAATTGGTAGATCCATGTTTGGAAGGAAACTATAACAAACAAGAAATGACAAGAATGGCAGCTTGCGCTTCTTCCAGCATCCGTCACTCTGCCAAGAAGCGTCCAAAAATGAGTCAGATTGTAAGGGCGTTGGAAGGAGATGTGTCATTGGATGACTTGAAGAATATGGGTAAGGCAGGTGCAACTGATGGTAGCGGTGGTGGTGTCCTGAACCCTTCAGGAGGAGGGAGCAATGACTATGACACAATGCAGTACAATGCTGATTTACAAAAGTTCAGAAAAACAGTGTTTTCAAGCCCGGAAAACACAAGCGGTAGTAGTGGTGAGAGGCCTTAA 1875 0.4843 MSSSNSSTLSPPSDDDTPSSDQSPPSPSSSSSSPPSSSSQDDDDSSSSSSPPPSPPSPPPPSQDSSSPSSSSPPAPLPPTPASQDSSPPATRPPGSSSGEALLPSPPGTSPSGSKGLGNLFSDDLGHIVAYVSIGVFFLILLIVAIVCIRRRSKKKKQQQQQKLYYYGGDAPDQQKTNYYYNNNNGGKNQNYYGGGGGPANQEHVVRMPNGMIGMGMVPGPNAGVGAAWGAQQPPQMMMSNGSDLSSNFSMGPPPLPPPSPGITLGLKAGTFTYEELAAATGNFADANMIGQGGFGYVYKGVFPNGKEVAVKTLKAGSGQGEREFQAEIEIISRVHHRHLVSLVGYCIAGGQRMLVYEFISNNTLEYHLHGKDLPTMDWPTRLRIAIGAAKGLAYLHEDCHPRIIHRDIKAANVLIDSSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEIITGKRPVDLSGAMDDSLVDWARPLLIRGLEEDGNFGELVDPCLEGNYNKQEMTRMAACASSSIRHSAKKRPKMSQIVRALEGDVSLDDLKNMGKAGATDGSGGGVLNPSGGGSNDYDTMQYNADLQKFRKTVFSSPENTSGSSGERP* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1188 624 PANTHER RECEPTOR-LIKE KINASE 27 615 - -
Amo05g1188 624 Gene3D Phosphorylase Kinase; domain 1 264 359 - -
Amo05g1188 624 SMART serkin_6 284 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1188 624 MobiDBLite consensus disorder prediction 1 115 - -
Amo05g1188 624 SUPERFAMILY Protein kinase-like (PK-like) 263 557 IPR011009 -
Amo05g1188 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Amo05g1188 624 MobiDBLite consensus disorder prediction 49 88 - -
Amo05g1188 624 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Amo05g1188 624 ProSiteProfiles Protein kinase domain profile. 284 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1188 624 Pfam Protein tyrosine and serine/threonine kinase 288 556 IPR001245 GO:0004672|GO:0006468
Amo05g1188 624 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 27 615 - -
Amo05g1188 624 MobiDBLite consensus disorder prediction 1 48 - -
Amo05g1188 624 Gene3D Transferase(Phosphotransferase) domain 1 360 570 - -
Amo05g1188 624 MobiDBLite consensus disorder prediction 584 598 - -
Amo05g1188 624 MobiDBLite consensus disorder prediction 572 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1188 Amo-Chr5 16262159 16265156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1188 272 610 Trihelix Transcription Factor Family AT1G70460 60.294 1.75e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo05g1188 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1188 - - ahf:112800691 991.875