Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1167 ATGCCGGTTGATTTAGACAATGTTTCAACAGCTTCAGGGGAAGCTAGTGTTTCTTCCTCTGGCAATCAGACAGTACCTTCAAAATCAGCCACCAAGAAAAAGCGTAATCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTATTGGCGACGAACAGATTCGTGTGCGAAATCTGCAACAAGGGTTTCCAGAGGGATCAGAACCTTCAGCTCCATCGAAGGGGTCACAACCTTCCATGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAAGAAGAGGGTGTATGTGTGCCCCGAGCCAACGTGCGTTCACCACGATCCTTCACGCGCGCTCGGGGATCTCACCGGAATCAAGAAGCACTTCTGCAGAAAGCACGGGGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAATACGCTGTTCAATCAGATTGGAAGGCTCACTCTAAGATTTGCGGCACTAGAGAGTACAAATGCGATTGTGGCACTTTGTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCGGAGGAAAGTGCGAGATCTCAGACTCATTCACAAACTACTCAGTCTCAGATTGGTGTTAAGGTTAGTTCTGAATCAGATTCTAAGGCTGTTAACGCTGAATCTTCGTCGCCTCAGCCGACACCTCCACCTCCTGCTACTACTCCTGCTCCTGCTCCACCACCGCCGCCTCCTCCGGTTCAGCCGGAAGCTCCGCCACTGCCGGCCACTACTACTACTACCACCACCACCACCACCCAGCCAAACACTGTTGTTGTGCCACTGGTTTTGCAGACTCATAATCCAGAGTTGCCAGAAAATTCCCCACAAATCATAGAAGAGCCACAAGCTAACACTGCTCTGAATGGGAGCTGTAGCAGCAGCACTAGCTCAACAAGCAATGGTGGTACTAGCAGCAGTGTATTTGCAAGTTTGTTCGCTTCATCAACTGCATCGGGTAACCTGCAATCCCAAACGCCACCTGCATTTACCGACCTCGTTAGGGCCATGGGGCCCCATGATCATCCAACAGATCTCCCAGGGCCATCCTCCTCGGAGCCCATTTCTTTGTGCCTTGCCACTAATCATGGCTCGTCAATTTTTGGAACAGGAGGGCAGGAGCGCCGCCAATATGCACCACCGCCACAGCCAACCATGTCTGCCACTGCTTTGCTGCAAAAAGCAGCTCAAATGGGTGCGGCTGCAACCAATGCCTCGCTGCTTCGTGGTTTAGGTATAGTGTCCTCTTCTGCTTCGTCTTCACCAGCTCAGCAAGATGGCTTGCAATGGGGTCAGCAGCCGGCTGAACCAGAGAGTGCCTCGGTTCCGGCGGGGCTTGGACTTGGGCTGTCTTTTGACAGTGGCTCTGGACTAAAGGAATTAATGATGGGGACTCCTTCCATGTTTGGTCCAAAGCATACCACCCTCGATTTTCTAGGATTGGGGATGGCTGCTGGGGGAACTCCTGGTGGAGGCTTGTCGGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTAGTGCTGCAGCAGCAGCATCTTTTGGAAACGGAGAGTTTTCTGGCAAAGACATTGGGCGGAGCACATGA 1629 0.52 MPVDLDNVSTASGEASVSSSGNQTVPSKSATKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTHSQTTQSQIGVKVSSESDSKAVNAESSSPQPTPPPPATTPAPAPPPPPPPVQPEAPPLPATTTTTTTTTTQPNTVVVPLVLQTHNPELPENSPQIIEEPQANTALNGSCSSSTSSTSNGGTSSSVFASLFASSTASGNLQSQTPPAFTDLVRAMGPHDHPTDLPGPSSSEPISLCLATNHGSSIFGTGGQERRQYAPPPQPTMSATALLQKAAQMGAAATNASLLRGLGIVSSSASSSPAQQDGLQWGQQPAEPESASVPAGLGLGLSFDSGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVSAAAAASFGNGEFSGKDIGRST* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1167 542 MobiDBLite consensus disorder prediction 191 270 - -
Amo05g1167 542 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 541 - -
Amo05g1167 542 MobiDBLite consensus disorder prediction 255 270 - -
Amo05g1167 542 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Amo05g1167 542 MobiDBLite consensus disorder prediction 430 458 - -
Amo05g1167 542 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Amo05g1167 542 MobiDBLite consensus disorder prediction 192 224 - -
Amo05g1167 542 MobiDBLite consensus disorder prediction 9 31 - -
Amo05g1167 542 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Amo05g1167 542 MobiDBLite consensus disorder prediction 346 366 - -
Amo05g1167 542 Gene3D Classic Zinc Finger 115 197 - -
Amo05g1167 542 Gene3D Classic Zinc Finger 41 107 - -
Amo05g1167 542 SMART c2h2final6 61 83 IPR013087 -
Amo05g1167 542 SMART c2h2final6 102 132 IPR013087 -
Amo05g1167 542 SMART c2h2final6 137 157 IPR013087 -
Amo05g1167 542 MobiDBLite consensus disorder prediction 225 254 - -
Amo05g1167 542 MobiDBLite consensus disorder prediction 1 44 - -
Amo05g1167 542 MobiDBLite consensus disorder prediction 430 450 - -
Amo05g1167 542 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1167 Amo-Chr5 15996402 16000661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1167 1 542 IDZ Gene Family AT5G66730 57.527 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo05g1167 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1167 K25869 - gmx:100806404 765.763