Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1164 ATGAGAGTTAACAATAACACGACATCAAACCCGAAACCCGTAGAAAGCACAATCGGCCTCGAGCCCACATCGGTGCTGGACCTGTGTAGAAGTCCCACCCCTGAGAAGGCAGTGGCTGCGCTGGTGGCTACTGCACCCAACACACAGCAAGAGTGTCTTGACCAGCTGGAGGACCATGTGCTTCACAATCTTGATTGGGACTCCATCATGAAGGACCTTGGATTCCATGAAGACTCCAACCCACCCTTGTTCAAGACCACCCTCCCTAATGTCCCTGACTTCTCTCCTTCCTTCGACCCACACTCCGAATTTCCAGACATCCAAACCATGTCCTACAACTACGCCAACGCCACTGCCACCCTCGACCACCTCCTCCATGACACCTCCAATAATTCTGCCGCCACCGGCTTCGATTTCATAGAAGAGCTCATCCGTGCTGCCGATTGCTTCGACACCAACCACCTCCACGTCGCTCACGTCATATTGGAGCGACTCAATCAACGCCTCCGATCCCCTGCGGGTGCAAAGCCTCTCCAACGCGCCGCCTTCTACTTCAAGGAAGCTCTCCAGGGCCTCCTCTCCGGTTCCAATCGCACTCCGCGTTTCTCCTCCCTCGTTGAGATCGTCCACTGCGTCAGAACATTCAAGGCCTTCTCTGGAATCTCGCCGATCCCTATGTTCTCCATCTTCACCACCAACCAGGCGCTCCTTGAGGCTTTTCATGGCTCCTCCTTCATGCACGTCCTTGATTTTGATATCGGATTAGGGATCCAGTATGCTTCGCTCATGAAGGAGATTGCAGAAAAGGCGGATTCCTTGAAACACGGATCGCCGCTTCTGCGCATCACCGCCGTCGTTCCCGAAGAGTACGCCGTCGAGAGCAAACTGATTCGGGAGAATCTCAGCCAGTTCGCGCACGAGCTCAGGATCCGCGTCCAGGTCGAGTTTGTGCCCCTCTGCAACTTCGAGACGCTGTCTTTTAAGGCGGTGAAGTTCGTCGATGGCGAGAAAACCGCCGTTCTTCTCTCGCCGGCGATATTCCGACGGCTCGGTTCCGCTGGGAGCACCGCGGCCTTCCTGGCGGACGTTCGGAGGGTTTCGCCGAGCGTGGTGGTGTTCGTGGACGGGGAGGGGTGGACGGAAGCTGCGGCAGCGGCGTCGTTCCGGCGCGGCGTGGTGAGCAGCCTAGAGTTCTACTCGATGATGCTGGAGTCGCTGGACGCGTCGATGGTTGCGGGAGGGGAGTGGGTGAGGAGGATCGAGATGCTTCTGCTGCGCCCGAAGATACTAGCGGCGGTGGAGGGAGCGGGGCGGAGGGTTCCGCCGTGGAGAGAGGCTTTCTATGGTGCCGGAATGAGGCCGGTGCAGTTAAGCCAGTTCGCAGATTTTCAGGCGGAGTGCTTGCTGGCTAAGGTGCAAATCAGGGGCTTCCACGTGGCAAAACGCCAAGCTGAGCTTGTGCTCTTCTGGCACGAGAGGGCCATGGTTGCCACTGGCTCTTGTTATGTTAATGAACTTTGCTGGTTGTCAAAATTCGAAGTAGTGTCCTTTCTATCTCTTTATGCCTTATGGTATGGTATGGGGTATTTTGCTGCAAAAGTGAGAAATCAAAGCGGTATGAAAATATGTTCCGAGAACCAAACTGGCTTTGTTGTTTGA 1659 0.557 MRVNNNTTSNPKPVESTIGLEPTSVLDLCRSPTPEKAVAALVATAPNTQQECLDQLEDHVLHNLDWDSIMKDLGFHEDSNPPLFKTTLPNVPDFSPSFDPHSEFPDIQTMSYNYANATATLDHLLHDTSNNSAATGFDFIEELIRAADCFDTNHLHVAHVILERLNQRLRSPAGAKPLQRAAFYFKEALQGLLSGSNRTPRFSSLVEIVHCVRTFKAFSGISPIPMFSIFTTNQALLEAFHGSSFMHVLDFDIGLGIQYASLMKEIAEKADSLKHGSPLLRITAVVPEEYAVESKLIRENLSQFAHELRIRVQVEFVPLCNFETLSFKAVKFVDGEKTAVLLSPAIFRRLGSAGSTAAFLADVRRVSPSVVVFVDGEGWTEAAAAASFRRGVVSSLEFYSMMLESLDASMVAGGEWVRRIEMLLLRPKILAAVEGAGRRVPPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATGSCYVNELCWLSKFEVVSFLSLYALWYGMGYFAAKVRNQSGMKICSENQTGFVV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1164 552 Pfam GRAS domain family 140 498 IPR005202 -
Amo05g1164 552 PANTHER SCARECROW-LIKE PROTEIN 15 15 497 - -
Amo05g1164 552 ProSiteProfiles GRAS family profile. 130 502 IPR005202 -
Amo05g1164 552 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 497 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1164 Amo-Chr5 15956554 15958693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1164 56 500 GRAS Transcription Factor Family AT4G36710 54.352 1.82e-159 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo05g1164 GRAS 1.9e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1164 - - aip:107640116 1020.38