Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1162 ATGGGGACTGGGGAAGAAAGCACAGCTAAACCTTCTAAACCATCGTCTACAACTCAGGAGATTGCACCGGCTCCTTCCTATCCTGATTGGTCAAGCTCTATGCAGGCTTATTATGCCCCTGGAGCTACTCCACCTCCTTTTTACGCCTCAACTGTTGCTTCTGCAGCTCCCCATCCCTATCTGTGGGGAGGCCAGCATCCTCTAATGCCACCATATGGTACTCCTGTTCCATATCCAGCTATATATCCTCCTGGGAGTGTCTATGCTCATCCTAGCATGGCAACGACTCCGAGTGCCCCACAGACCGACTTTGTAGGCAAGGTACCCAACGGAAAAGATCGGAATTCCGCTAAAAATTTGAAGGGAACTTCTGCCAATAATGGTTCTAAAGCAGGAGACAATGGAAAGGCAGGCTCGGGGTCAGGAAATGATGCCATCTCACAAAGTGGTGAAAGCGGTTCTGAGGGATCATCCGATGACAGTGATGAGAATGCTAACCATCAGGAATCGGCTACAAACAAGAAAGGAAGCTTTGACAAAATGCTTGCTGATGGAGCCAATGCACAGAACAATGCCGGAACTCAATCTTCTGGAAAGGCTGCTGTGTCAATGGCTGCAACTAATCTTAATATTGGAATGGACTTGTGGAATGCATCTTCTGCAGGTGCTGATGCTACAAAACTGAGAAACAATCAACCTGCCCCAGGAGCTGTCAACCCTCCTACTATAATGGGACGTGAAGTTGCACTTGGTGAACAGTGGATACAAGACGAACGTGAGCTGAAGAGACAGAAAAGGAAACAGTCTAACAGAGAATCAGCTAGGAGGTCAAGACTACGCAAGCAGGCCGAGTGTGAAGAGTTGCAAAAGAAGGTGGAGTCACTGGGAAACGAGAACCGAACTCTGAGAGAAGAACTTCAGAGAGTATCAGAAGAATGCGAGAAGCTTACAGCTGAAAATAATTCCATCAAGGAAGAGTTGGAAAGGTTATGTGGACCAGAAGCAGTTGCCAGCCTCGAATAA 1023 0.4761 MGTGEESTAKPSKPSSTTQEIAPAPSYPDWSSSMQAYYAPGATPPPFYASTVASAAPHPYLWGGQHPLMPPYGTPVPYPAIYPPGSVYAHPSMATTPSAPQTDFVGKVPNGKDRNSAKNLKGTSANNGSKAGDNGKAGSGSGNDAISQSGESGSEGSSDDSDENANHQESATNKKGSFDKMLADGANAQNNAGTQSSGKAAVSMAATNLNIGMDLWNASSAGADATKLRNNQPAPGAVNPPTIMGREVALGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQKKVESLGNENRTLREELQRVSEECEKLTAENNSIKEELERLCGPEAVASLE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1162 340 Coils Coil 271 326 - -
Amo05g1162 340 Pfam bZIP transcription factor 258 320 IPR004827 GO:0003700|GO:0006355
Amo05g1162 340 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 340 IPR044827 GO:0003700|GO:0006355|GO:0043565
Amo05g1162 340 Pfam G-box binding protein MFMR 2 93 IPR012900 -
Amo05g1162 340 MobiDBLite consensus disorder prediction 116 155 - -
Amo05g1162 340 MobiDBLite consensus disorder prediction 187 201 - -
Amo05g1162 340 MobiDBLite consensus disorder prediction 260 284 - -
Amo05g1162 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 260 323 IPR004827 GO:0003700|GO:0006355
Amo05g1162 340 CDD bZIP_plant_GBF1 263 313 IPR045314 GO:0003700|GO:0006355
Amo05g1162 340 PANTHER G-BOX-BINDING FACTOR 1 1 340 - -
Amo05g1162 340 MobiDBLite consensus disorder prediction 224 243 - -
Amo05g1162 340 SUPERFAMILY Leucine zipper domain 261 317 IPR046347 GO:0003700|GO:0006355
Amo05g1162 340 MobiDBLite consensus disorder prediction 59 201 - -
Amo05g1162 340 SMART brlzneu 258 322 IPR004827 GO:0003700|GO:0006355
Amo05g1162 340 MobiDBLite consensus disorder prediction 1 27 - -
Amo05g1162 340 Gene3D - 261 315 - -
Amo05g1162 340 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 265 280 IPR004827 GO:0003700|GO:0006355
Amo05g1162 340 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1162 Amo-Chr5 15945302 15950481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1162 1 340 bZIP Transcription Factor Family AT4G36730 52.493 5.68e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo05g1162 MFMR 9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1162 K09060 - gmx:547788 491.5