Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1134 ATGCTACTATGCACTACTCCAAATAAAACTAGCAAACATTTTAAGATATTCCCTACTTCTCCTTCTCCTAAACATATTCATTATATCCAACACACAATCAACATGGCTACTATCCTTTTGGCCATTGTGATTGCCACCCTTTTCACTGCAAACCCTATTTCTTGCGCCAAGCAATCCAAAATAACTGGCATGAAAATGAACGTCATTGATCAATGTTGGAGATTGAATCCCCAATGGAGGAGCCATCGATCGCAACTCGCCAGCTGCTCCATTGGCTATGCGGGCAAGATGATGAACAACATTGGCAATGACCTCGTCTATTATGAAGTTACTGACCCTAGTGATGACCCCATTAACCCTAAGCCTGGTACCTTGCGGTATGGAGCTTCTATGATTCAACAAAAAGTTTGGATTACATTTAAAAGCGATATGAAAATCACATTGGCCAAACCCCTTCTCATTAGTAGCTTTACCGCCATTGATGGTCGTGGCACCAATGTCCACATTTCCAATAATGCATGCTTCATGATCTTTAAGGCAACGAATGTAATAATCCACAGCATTCGAATCCATCATTGTAAGTCACAAGCTCCTGGGTTGGTGGTGGGTCCAAATGGGAAGGTAATTTCATTGGGTCAAGTTGATGGCGATGCAATCAGACTAGTCACTGCCTCAAAGATTTGGATTGATCATAATACACTTCATGATTGCGAAGATGGTCTTCTTGATGTTACACGAGGTTCCACTGATGTCACTATCTCTAACAACTGGTTCCGAAACCAAGATAAGGTTATGCTTCTTGGCCATGACGATGGATATATTAGAGACCGGAACATGAAAGTTACTGTTGTCTACAATCATTTCGGACCGAATTGCAACCAACGCATGCCAAGGATCCGTCATGGATATGCACATGTAGCAAACAATCTTTATCAGGGATGGATGCAATATGCTATTGGTGGAAGCAAAGAACCCAGCCTCAAAAGCCAATCTAACCTCTTCATAGCACCTAAATCCGGGAACAAGGAGGTGACATGGAGAAAAGGCAGTAACGAAAATGGGGATAGATGGGAATTCCATTCAGTAGGGGATGTTTTTGAAAATGGAGCGTCTTTCACGGCAACTGAAGGAGGACGTGTGCCAAAACCTAATTATAGTGAGGAACAACGTTTTAAGGTTCTTGATGCTAAGTCTGTTAGATTTTTGACAAAATCCTCTGGCGTACTACGATGCACCAACAAAAAATCTATTTGCTAA 1257 0.4185 MLLCTTPNKTSKHFKIFPTSPSPKHIHYIQHTINMATILLAIVIATLFTANPISCAKQSKITGMKMNVIDQCWRLNPQWRSHRSQLASCSIGYAGKMMNNIGNDLVYYEVTDPSDDPINPKPGTLRYGASMIQQKVWITFKSDMKITLAKPLLISSFTAIDGRGTNVHISNNACFMIFKATNVIIHSIRIHHCKSQAPGLVVGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLHDCEDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDRNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSKEPSLKSQSNLFIAPKSGNKEVTWRKGSNENGDRWEFHSVGDVFENGASFTATEGGRVPKPNYSEEQRFKVLDAKSVRFLTKSSGVLRCTNKKSIC* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1134 418 SUPERFAMILY Pectin lyase-like 56 400 IPR011050 -
Amo05g1134 418 SMART amb_all 143 340 IPR002022 -
Amo05g1134 418 Pfam Pectate lyase 154 334 IPR002022 -
Amo05g1134 418 PANTHER PECTATE LYASE 41 414 - -
Amo05g1134 418 PANTHER PECTATE LYASE 18-RELATED 41 414 IPR045032 GO:0030570
Amo05g1134 418 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Amo05g1134 418 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Amo05g1134 418 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Amo05g1134 418 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Amo05g1134 418 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Amo05g1134 418 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Amo05g1134 418 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Amo05g1134 418 Gene3D - 66 410 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1134 Amo-Chr5 15516639 15518335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1134 97 349 Polysaccharide Lyase AT5G09280 71.542 2.45e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1134 K01728 - gmx:100780437 633.254