Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1127 ATGGGTTGGTTATCCAAGTTGCTTAAGGGCTCTAACCATAGAACTTCAAGAGGGCAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAACCATCATGCTTCAGTGGATGATTTGAACGATGTTGAGAAAGAGGACATTGATTGTGCAATTGCACTCTCTCTGTCAGAGCAGGATCAGAAAGGAAAAAGTGTTGTTGAGGACGACTCTCAATCCGAAGAAGATGAACAACTTTGTAAAGTTGATGATGAGGAAGATGAGCATACTTGTACAGTTCAACAACAAGAAGAAGAACATCTTGATAAGGTTCGGCTGGATGAAGATGATGAACATCTTTCTAAAGATCAACTTGAGGAAGATGAGCAACTTGCCAGGGCAATCCAAGAAAGTTTGAAAATTGATTCTCCTCCTAGTCCTAGATATGAGAATGATTCTATTTTCCAACCTTTATCAAACCTCTTTCCACCAGGATACAGAATCTGTGCTGGATGCAAAGCTGAAATTGGGCATGGAAGATTTTTAAGTTGCATGGGAGCTGTTTGGCATCCACAATGTTTTCGCTGCAATGCTTGCAATCTTCCAATAACAGATTATGAGTTTTCCATGTCTAGCAATTGCCCCTACCATAAATCTTGCTACAGGGAGCAACACCACCCAAGATGTGATGTTTGCAATAACTTTATTCCAACTAATTCAGCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGTCCATCGCATGATCGAGATGGAACTCCTCGGTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATACAAAGTATCTTTTGCTTGATGATGGTAGAAAGCTATGTTTAGAGTGTCTGGACTCATCAATCATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAGTTCTATGAAGGTTTAAACATGAAAGTTGAGCAGCAAGTTCCTATGCTTCTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTGCCTGAAACTAGAGGACTGTGTTTGTCAGAAGAGCAAACTGTCACCTCGATTTCAAGGAGACCAAAGATAGGAGCAGGCCATCGAGTCGTGGATATGGTAACAGAGCCTTTTAGGCTGATCCGTCGATGTGAAGTGACAGCCATTCTTGTGTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGTTGTGTGTCTTTTACAGGTTATCCCAATCTGA 1290 0.4217 MGWLSKLLKGSNHRTSRGQYHGKYGEDRIWDNHHASVDDLNDVEKEDIDCAIALSLSEQDQKGKSVVEDDSQSEEDEQLCKVDDEEDEHTCTVQQQEEEHLDKVRLDEDDEHLSKDQLEEDEQLARAIQESLKIDSPPSPRYENDSIFQPLSNLFPPGYRICAGCKAEIGHGRFLSCMGAVWHPQCFRCNACNLPITDYEFSMSSNCPYHKSCYREQHHPRCDVCNNFIPTNSAGLIEYRAHPFWLQKYCPSHDRDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTSISRRPKIGAGHRVVDMVTEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKVVCLLQVIPI* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1127 429 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 243 - -
Amo05g1127 429 Pfam Protein DA1 311 421 IPR022087 -
Amo05g1127 429 Gene3D Cysteine Rich Protein 156 219 - -
Amo05g1127 429 ProSiteProfiles LIM domain profile. 160 220 IPR001781 -
Amo05g1127 429 MobiDBLite consensus disorder prediction 59 107 - -
Amo05g1127 429 CDD LIM_DA1 162 214 - -
Amo05g1127 429 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 119 138 IPR003903 -
Amo05g1127 429 PANTHER PROTEIN DA1-RELATED 2 1 420 IPR045218 -
Amo05g1127 429 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 420 - -
Amo05g1127 429 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 187 - -
Amo05g1127 429 SMART uim 119 138 IPR003903 -
Amo05g1127 429 SMART uim 43 62 IPR003903 -
Amo05g1127 429 SMART lim_4 161 213 IPR001781 -
Amo05g1127 429 MobiDBLite consensus disorder prediction 1 27 - -
Amo05g1127 429 Pfam LIM domain 162 217 IPR001781 -
Amo05g1127 429 MobiDBLite consensus disorder prediction 84 107 - -
Amo05g1127 429 ProSitePatterns LIM zinc-binding domain signature. 162 196 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1127 Amo-Chr5 15384918 15388375 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo05g1127 DA1-like 2.4e-57 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1127 - - aip:107642826 874.389