Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1120 ATGTCCCATCAGCAAGATTACCAGCAACAAGCAGCAGGAATCTTCAGCTTCACGAATGGCTTCGAGAGATCGACGGTAACACACCAACAAGCACAGATCCGAAGGGACAACAACAAAGGCTTCGATGCACCGCCACCACCATTAGTAGGGATAGACGAGGAAGAAGAACAAGCAGGAGGAGCTGCAGGAGGAGGCCTTCCCCATGTGTATGAAACCGCAGGCATGCTTTCGGAGATGTTCAATTTCCCTGCCACCGAGCTCCTGGAACAGCAGCACCACCACTTCCGCTCCCCTTCTTCGTCGAGGCCACAACCACCAGAGAACTGGTACGGAAGCAGGCAAGGCATGATAGCCACCACCACGACGGGGTTTGGAGGAGACTCCAAGCAGCAGATTTCAAGCATGAATGCGGATTCAGCAGCAGCCATGCACCTTTTCCTGATGAACCCAGCTCAAAGGAGATCTCCTTCGCCTCCTCCATCGGCAACCTCTTCCACTCTCCACATGCTTCTTCCCAACCATTCCTCCAACTCCTTACAAGGGTTCCCTCCTGCTGGCTCCGCAGGAGGGTCTTTCGGGCAATTCACATGGGTTCCCGACAGCGGCGCCGGCCATGAGGGAGCAGCTAACAACCCTCCTGGCCATCACGAGATTAACGTGGTGGAAGGGCAAGGCCTTTCGCTCTCGCTTTCGTCTTCGCTTCAGCACTTGGAAGCTGCGAAAGCGGAGGAACTGAGGATGGGAGAAGGCGGTTTTCTGTTTTACAATCAAGGGGGAGGGGCGGCGGCGGCTTCTAATTCGGGTCATTTTCCGTACAAGAACCATTTGCAAGGTGGCATGGTAGGACAGGGGCACCTTGCTGGGTTCCCTTCTGCTTCATCTTCTTCGTCCTTAGGGGTAGTCCACGTTCTTAGGAATTCAAAGTATGTGAAAGCCGCACAAGAGTTGCTTGAGGAGTTTTGCAGTGTTGGAAGGGGCCACTTGAAGAAAAACAAGTTCAGTAGGCAGAATTCAAACCCTAATTCCACCGCCTCTCCTTCATCTTCCAAAGATCCTCCTCCTGCTGCAGCTCCACCTCCGCCTCCTTTGTCAGCTTCCGACAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTTGACGAGGTGGACCGAAGATACAACCACTACTGCGAGCAAATGCAGATGGTGGTGAACTCATTTGACGTGGTGATGGGGTACGGGGCGGCGGTGCCGTACACGGCGCTGGCGCAGAAGGCGATGTCGAGGCATTTCCGGTGCCTGAAGGACGCAATAACGACGCAGCTGAAGCATTCGTGCGAGGTGCTGGGGGAGAAGGAGGGGGCGGGAGGGTCAGGGCTGACGAAGGGGGAGACGCCGCGGCTGAAGATGTTGGAACAGAGCCTACGGCAGCAGAGGGCGTTTCAGCAGATGGGTATGATGGAACAAGAAGCTTGGAGACCTCAGAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGAGCTTGGCTTTTTGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTCTTGGCGAGGCAGACTGGCCTCTCCAGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACAAAAAGAAGCAGAGGAGTGTGGGGCAGCGGAAGAAGGCGAAGAAGAGGAAGAAGAAGAACAAAACAACAGCAGCAACGGTGGGCAGCAACAAGCACAAAATCCAAGCACAACGAGTGGCGGTGAAAGCGAAATACAAGTAGAAGGGTTTTCGGAAAACCAAGAGGGAATGGTTGCGCAAGGTGGAATGGCGTCGGAGATGATGCCCCCACAACAGTCACAGAGATCGATGGCAAGCGATGACACGTGTCGACATGGCAGCTACGTAGCAGGTGCTGAATATGGGACCGCGTCTACTACTGCTGCTGCTGCCGCTGCTGACATTGGATCCGCTACCCTCATTAGGTTCGGGACCACCGCCGGTGACGTGTCACTCACCCTAGGGTTACGCCACGCCGGGAACGTCCCCCGACAAAACCCCTTTTTCTCTTAG 2103 0.5411 MSHQQDYQQQAAGIFSFTNGFERSTVTHQQAQIRRDNNKGFDAPPPPLVGIDEEEEQAGGAAGGGLPHVYETAGMLSEMFNFPATELLEQQHHHFRSPSSSRPQPPENWYGSRQGMIATTTTGFGGDSKQQISSMNADSAAAMHLFLMNPAQRRSPSPPPSATSSTLHMLLPNHSSNSLQGFPPAGSAGGSFGQFTWVPDSGAGHEGAANNPPGHHEINVVEGQGLSLSLSSSLQHLEAAKAEELRMGEGGFLFYNQGGGAAAASNSGHFPYKNHLQGGMVGQGHLAGFPSASSSSSLGVVHVLRNSKYVKAAQELLEEFCSVGRGHLKKNKFSRQNSNPNSTASPSSSKDPPPAAAPPPPPLSASDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDVVMGYGAAVPYTALAQKAMSRHFRCLKDAITTQLKHSCEVLGEKEGAGGSGLTKGETPRLKMLEQSLRQQRAFQQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEQKEAEECGAAEEGEEEEEEEQNNSSNGGQQQAQNPSTTSGGESEIQVEGFSENQEGMVAQGGMASEMMPPQQSQRSMASDDTCRHGSYVAGAEYGTASTTAAAAAADIGSATLIRFGTTAGDVSLTLGLRHAGNVPRQNPFFS* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1120 700 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 693 - -
Amo05g1120 700 MobiDBLite consensus disorder prediction 556 602 - -
Amo05g1120 700 MobiDBLite consensus disorder prediction 351 365 - -
Amo05g1120 700 MobiDBLite consensus disorder prediction 331 370 - -
Amo05g1120 700 MobiDBLite consensus disorder prediction 333 350 - -
Amo05g1120 700 SMART prehox3 298 436 IPR006563 -
Amo05g1120 700 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 50 693 - -
Amo05g1120 700 ProSiteProfiles 'Homeobox' domain profile. 485 548 IPR001356 GO:0003677
Amo05g1120 700 SMART HOX_1 488 552 IPR001356 GO:0003677
Amo05g1120 700 CDD homeodomain 488 549 IPR001356 GO:0003677
Amo05g1120 700 MobiDBLite consensus disorder prediction 158 184 - -
Amo05g1120 700 MobiDBLite consensus disorder prediction 151 217 - -
Amo05g1120 700 MobiDBLite consensus disorder prediction 564 579 - -
Amo05g1120 700 Pfam Associated with HOX 303 435 IPR006563 -
Amo05g1120 700 SUPERFAMILY Homeodomain-like 489 555 IPR009057 -
Amo05g1120 700 Pfam Homeobox KN domain 505 544 IPR008422 GO:0003677|GO:0006355
Amo05g1120 700 Gene3D - 491 553 - -
Amo05g1120 700 MobiDBLite consensus disorder prediction 580 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1120 Amo-Chr5 15270018 15277771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1120 2 94 Homeobox Transcription Factor Family AT2G23760 36.111 1.60e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo05g1120 POX 3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1120 - - adu:107487904 1134.01