Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1119 ATGGGTTGGTTATCCAAGTTGCTTAAGGGCTCTAACCATAGAACTTCAAGAGGGCAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAACCATCATGCTTCAGTGGATGATTTGAACGATGTTGAGAAAGAGGACATTGATTGTGCAATTGCACTCTCTCTGTCAGAGCAGGATCAGAAAGGAAAAAGTGTTGTTGAGGACGACTCTCAATCCGAAGAAGATGAACAACTTTGTAAAGTTGATGATGAGGAAGATGAGCATACTTGTACAGTTCAACAACAAGAAGAAGAACATCTTGATAAGGTTCGGCTGGATGAAGATGATGAACATCTTTCTAAAGATCAACTTGAGGAAGATGAGCAACTTGCCAGGGCAATCCAAGAAAGTTTGAAAATTGATTCTCCTCCTAGTCCTAGATATGAGAATGATTCTATTTTCCAACCTTTATCAAACCTCTTTCCACCAGGATACAGAATCTGTGCTGGATGCAAAGCTGAAATTGGGCATGGAAGATTTTTAAGTTGCATGGGAGCTGTTTGGCATCCACAATGTTTTCGCTGCAATGCTTGCAATCTTCCAATAACAGATTATGAGTTTTCCATGTCTAGCAATTGCCCCTACCATAAATCTTGCTACAGGGAGCAACACCACCCAAGATGTGATGTTTGCAATAACTTTATTCCAACTAATTCAGCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGTCCATCGCATGATCGAGATGGAACTCCTCGGTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAGTATCTTTTGCTTGATGATGGTAGAAAGCTATGTTTAGAGTGTCTGGACTCATCAATCATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAGTTCTATGAAGGTTTAAACATGAAAGTTGAGCAGCAAGTTCCTATGCTTCTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGCAAGTGTTGAACTTCCAATCAGCCAATGGTCATCACCACTTGCCTGA 1065 0.4131 MGWLSKLLKGSNHRTSRGQYHGKYGEDRIWDNHHASVDDLNDVEKEDIDCAIALSLSEQDQKGKSVVEDDSQSEEDEQLCKVDDEEDEHTCTVQQQEEEHLDKVRLDEDDEHLSKDQLEEDEQLARAIQESLKIDSPPSPRYENDSIFQPLSNLFPPGYRICAGCKAEIGHGRFLSCMGAVWHPQCFRCNACNLPITDYEFSMSSNCPYHKSCYREQHHPRCDVCNNFIPTNSAGLIEYRAHPFWLQKYCPSHDRDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNASVELPISQWSSPLA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1119 354 Pfam LIM domain 162 217 IPR001781 -
Amo05g1119 354 Pfam Protein DA1 311 342 IPR022087 -
Amo05g1119 354 ProSiteProfiles LIM domain profile. 160 220 IPR001781 -
Amo05g1119 354 MobiDBLite consensus disorder prediction 59 107 - -
Amo05g1119 354 CDD LIM_DA1 162 214 - -
Amo05g1119 354 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 119 138 IPR003903 -
Amo05g1119 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 243 - -
Amo05g1119 354 SMART uim 119 138 IPR003903 -
Amo05g1119 354 SMART uim 43 62 IPR003903 -
Amo05g1119 354 SMART lim_4 161 213 IPR001781 -
Amo05g1119 354 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 345 - -
Amo05g1119 354 MobiDBLite consensus disorder prediction 1 27 - -
Amo05g1119 354 MobiDBLite consensus disorder prediction 84 107 - -
Amo05g1119 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 187 - -
Amo05g1119 354 ProSitePatterns LIM zinc-binding domain signature. 162 196 IPR001781 -
Amo05g1119 354 Gene3D Cysteine Rich Protein 156 219 - -
Amo05g1119 354 PANTHER PROTEIN DA1-RELATED 2 1 345 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1119 Amo-Chr5 15236302 15240747 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo05g1119 LIM 1.9e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1119 - - aip:107642826 713.761