Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1117 ATGGAGCACGCCGAATTATCCACTGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACGTGTCCACTAAGCTCATCTCTGGTACAACCCTTCAGCTCCTACGCCGTTACGACCATCGTTCTGAAACCCACCGTGCCCAATTGCTACATGAGGATGGTCCGGCTTATGTTCGCATGTTTGTTCATGTATTGCGTGATATTTTCAAAGAAGAGACTGTAGAATATGTTCTAGCTTTGATAGATGAGATGCTCACAGCCAATCCTAAAAGAGCAAGACTGTTTCATGACAAGACCCTTGCAGATGAAGACACTTATGAACCTTTCTTAAAAATTTCTTTTACAAGGGTTCCACATCTTCCACCAGCCATTAATGATCATACTCTGATTTTCATGATATTTATTCTTATGTTGCTTTGGAGAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCTTTAATAGTTAGTGCCAGGCCCAAAAATCAGAATGGCGGTGTTGTAAATTCAGAATCAAACTCAAAGAAAGCATTTACCACGATTGAAGATGTTCTAGGAGGATTGGTAAAATGGCTTTGCGAACAGTTGAAGAAGCCTTCTCATCCTACACGGGGTGTTCCAACTGCCATCAATTGCCTGGCAACTCTACTTAAGGAACATGTGGTTAGGTCTTCCTTTGTTCAAGCAGACGGAATCAAGTTGCTTGTACCTTTGATTTCTCCTGCATCCACCCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGTGTATGGCTCTTATCCTACTATGAACCGGCAATTGAATACTTGACTACCTCAAGAACCCTTCCTTCTCTTGTTGATGTTGTTAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTTGTTGTCCTTACCTTTAAGAACTTGCTATCAAAAGGGACATTGGCTGCTCAAATGATTGACCTTCAGCTACCACAAGTTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGGATTGAATTACCTGGAGGATGGGCTTAAGGATAGCATTAAGAAATTAAGTTCTTTTGATGTGTATAAGCAAGAAGTTCTCCTTGGCAATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTTTGGCGAGATAATATTGCCCATTTTGAAGAGAATGACTTCCAGATTATAAGGGTTCTAATAACAATTTTGGACACTGGTAGCAATCCAAGGACTTTGGCTGTTGCTTGCTTTGACCTTTCGCAGTTCATCCAGCACCATCCTTCTGGGCGTCTCATTGTGGCGGACCTCAAGGCGAAGGAACGAGTAATGAAACTAATGAATCATGAGAATGCTGAAGTTACTAAGAATGCGCTGCTCTGCATCCAAAGACTTTTCTTAGGTGCAAAGTATGCCAGCTTCTTGCAGGCTTAG 1434 0.4198 MEHAELSTEQVLRRDIPWETYVSTKLISGTTLQLLRRYDHRSETHRAQLLHEDGPAYVRMFVHVLRDIFKEETVEYVLALIDEMLTANPKRARLFHDKTLADEDTYEPFLKISFTRVPHLPPAINDHTLIFMIFILMLLWRGNWFIQEKSCKILALIVSARPKNQNGGVVNSESNSKKAFTTIEDVLGGLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEHVVRSSFVQADGIKLLVPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLTTSRTLPSLVDVVKSSTKEKVVRVVVLTFKNLLSKGTLAAQMIDLQLPQVVQSLKAQAWSDEDLLEGLNYLEDGLKDSIKKLSSFDVYKQEVLLGNLDWSPMHKDPIFWRDNIAHFEENDFQIIRVLITILDTGSNPRTLAVACFDLSQFIQHHPSGRLIVADLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1117 477 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 135 477 - -
Amo05g1117 477 SMART arm_5 220 265 IPR000225 GO:0005515
Amo05g1117 477 SMART arm_5 427 467 IPR000225 GO:0005515
Amo05g1117 477 SMART arm_5 266 307 IPR000225 GO:0005515
Amo05g1117 477 Gene3D - 3 356 IPR011989 -
Amo05g1117 477 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 91 - -
Amo05g1117 477 PIRSF V-ATP_synth_H 1 476 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo05g1117 477 Pfam V-ATPase subunit H 354 466 IPR011987 GO:0000221|GO:1902600
Amo05g1117 477 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 135 477 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo05g1117 477 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 91 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo05g1117 477 SUPERFAMILY ARM repeat 8 467 IPR016024 -
Amo05g1117 477 Pfam V-ATPase subunit H 3 112 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo05g1117 477 Pfam V-ATPase subunit H 130 348 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo05g1117 477 Gene3D - 369 469 IPR038497 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1117 Amo-Chr5 15203444 15208458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1117 1 477 Primary Pumps ATPases(2) AT3G42050 72.327 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1117 K02144 - gmx:100796479 767.303