Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1094 ATGTGGGATCTGAATGACTCTCCCGACCACAGAAAGGACTACGACTCTGAAGAAGCTTGTTCTTCACCCAAGACTACCACTACTTCCATGGACGATGACGTCAGAGGCAAGACCCTCCGATCTGCCTCCAATTCCAGCTCCTCTGCAGTCCTCCTAGAAGACGGATCCGAAGAAGACGAAGAACAAGCCAGCAGAACAACAACCACTCTCAACAACATCAACAGTACCAGCAAGATATTCGGCTTCTCCGTCACCCCCATGGACGGCGACGACAACCCTCCCGTGACCCATCAGTTTTTCCCGGTGGAGGACTCCGGCTGTGGCGGAGGAGGAGGAGGAAGCTCGTCGTCGTCGTCGTTCCCTCGAGCTCACTGGGTTGGCGTGAAGTTCTGCCAATCGGAAGCAGTAGTTGGGGGCGGTGGGAAATCGGCGGCGGTGGAAGTCTCTCAGCCTATGAAGAAGAGCCGGAGAGGACCAAGGTCTCGGAGCTCACAGTATAGAGGAGTCACCTTTTACCGAAGAACGGGTCGTTGGGAATCTCATATTTGGGATTGTGGAAAACAAGTTTATCTGGGTGGATTTGACACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCAATTAAGTTCCGCGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTGACAAAGGAAGAATTTGTGCACGTGCTTCGGCGACAAAGCACTGGCTTTCCAAGAGGAAGTTCCAAATATAGAGGTGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTCTAGGCAAAAAGTACGTTTATCTGGGCCTCTTTGATACTGAGATTGAAGCTGCCAGGGCTTATGACAAAGCAGCAATCAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAACGAGCTTAATTCTGAATCGTCAGGAGGCAACGGTGCAGCAGATCACAATCTGGATCTAAGTTTGGGCAATCCAAGTTCAAAGCATAGCAGTAATCAAGCACTGGGGACAACGGATTGGCACAATGAGGGAGCCAACAATAACAAGCATAAGCTGGTGAATATACTACCAAAACCATGTAGTAGTAGAAGCAACATAGAGCAGCATGGACAGCGTGAGAGTGAAGCCATGGCCCCAATGCCGCGGCTGCATCAAACTCAATTTCCGCTCTCAAACGAAATGCATAGATACGGTCCTTATTATAGATCCCATCATGCAGCTGGAGACACTCCGCATCAAATGCTACACGCGTTTCCACCAAATTTTCATTTTCCAAGCAGCAGCAAAGGAGGCCGAATTGGAAGCGAGCTTTCGCTGTCATCATCAATGAGCGATCAAGAACAACATGTACAGTGGCAAGCAGGAGCTGGAGGAGGGCCTCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCGCCGCAGATTTTAACACCCTCCCAAGGTTGGATCCACAAAAATGGCTTCCACACTCTCATGAGACCCTCTTAA 1554 0.4968 MWDLNDSPDHRKDYDSEEACSSPKTTTTSMDDDVRGKTLRSASNSSSSAVLLEDGSEEDEEQASRTTTTLNNINSTSKIFGFSVTPMDGDDNPPVTHQFFPVEDSGCGGGGGGSSSSSSFPRAHWVGVKFCQSEAVVGGGGKSAAVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGGNGAADHNLDLSLGNPSSKHSSNQALGTTDWHNEGANNNKHKLVNILPKPCSSRSNIEQHGQRESEAMAPMPRLHQTQFPLSNEMHRYGPYYRSHHAAGDTPHQMLHAFPPNFHFPSSSKGGRIGSELSLSSSMSDQEQHVQWQAGAGGGPPHLLATAAAASSGFPPQILTPSQGWIHKNGFHTLMRPS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1094 517 MobiDBLite consensus disorder prediction 445 465 - -
Amo05g1094 517 MobiDBLite consensus disorder prediction 141 165 - -
Amo05g1094 517 SUPERFAMILY DNA-binding domain 256 316 IPR016177 GO:0003677
Amo05g1094 517 ProSiteProfiles AP2/ERF domain profile. 257 314 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 MobiDBLite consensus disorder prediction 1 70 - -
Amo05g1094 517 Gene3D AP2/ERF domain 164 223 IPR036955 GO:0003700|GO:0006355
Amo05g1094 517 Gene3D AP2/ERF domain 256 315 IPR036955 GO:0003700|GO:0006355
Amo05g1094 517 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Amo05g1094 517 CDD AP2 256 316 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 MobiDBLite consensus disorder prediction 1 19 - -
Amo05g1094 517 MobiDBLite consensus disorder prediction 321 365 - -
Amo05g1094 517 MobiDBLite consensus disorder prediction 450 465 - -
Amo05g1094 517 ProSiteProfiles AP2/ERF domain profile. 165 221 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 SMART rav1_2 257 320 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 SMART rav1_2 165 227 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 515 - -
Amo05g1094 517 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 515 - -
Amo05g1094 517 Pfam AP2 domain 256 305 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 Pfam AP2 domain 165 213 IPR001471 GO:0003700|GO:0006355
Amo05g1094 517 CDD AP2 165 222 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1094 Amo-Chr5 14573794 14577183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1094 1 350 AP2-EREBP Transcription Factor Family AT4G36920 69.167 5.58e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo05g1094 AP2 3.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1094 K09284 - gmx:100801975 633.639