Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1078 ATGCCTATGAAAAGAACTGCACCTGATTACGCTCACCGAGAGTTTACGGTGGGTGAGAGCTCAAGTGACGGTGGTGCTGGTGGTGGTTCTGTTGCTCAACCTATGGCAGCCCCCAAGCGCCGCCCCATCGCAAATGAAAATGAGGCTGTGCGCATTTCATCATCATCATCTAATACCTGCACTTGTACTCCTTCTCCCACTTGCCCTCTCCATGCTTCCACCAATAATAATATTTCTTCATCTTCCAGGGAACAACGCCATGAAACTGCTAACAACAACAACAACCCCCAAAATGTTGTTCGTGTTCCTTCTAGTTTGTCGCCAATTTCTGAGATGCAACGAGCTCTTCATAGCCACCACCACCAAGTCCACCATGGCCATCAACGTTATTTCTCCTCTGCTGACACTTCTCCATTCCGCCCAGCCTCAATCAATTACATGGAAAATCTTCCTCATCATCAGTACGCCGGTTCTTCGTCTTCGTCTCCTTCCCCTCATCCTTGGAGCACCGTGATTAGGCCAAGGGCTATTCCCTCTCTGTCTCTCCCTCACCGAGTTGGAGGAAGTAATAGAGAATCTGACACCGGAAACAACTATCCTTCTGGAAGGGGAATAATCACTGTGACTCACAATCGTGGAAACTCATCATCATCAACACAGCTAGTGGAAAGCCTTGTACAAAACGCTGGTACCCCTTCTGCATTTCAGCACCTGTCGGACGCTGCTCTTGCATGGATTGGAAGGCTGAACTCTCATGACGCGACCTTGACGAGAATGTCATCATCTTCTACCACTGATAATACTCATCACAGGCCATTGCGAGCTTCTGCTATTGCTGAGGAGGCCTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGAAGAGAGAGCCGCAATGCCATTCAACATCTGCCTAGTGGAGACTCCGTTCGAGAACTCGAGGAGCTTTTAATCCTTGATTACTCCAACTTGCTTGCCAGCATTGAGGAGGAGGAGGATGCGAATTTGCCGCAATATGAGCCTCTGGCAGACGGGCAGCGAGTGACGAACCCTGATTTAAGACTGACGGAAACTGAGGTTGCAGCATGTATTGGGCYGGAAATTTTCCAAACTGTTGYTWAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCAYYAGGACTATGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCCGTTTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAG 1308 0.4817 MPMKRTAPDYAHREFTVGESSSDGGAGGGSVAQPMAAPKRRPIANENEAVRISSSSSNTCTCTPSPTCPLHASTNNNISSSSREQRHETANNNNNPQNVVRVPSSLSPISEMQRALHSHHHQVHHGHQRYFSSADTSPFRPASINYMENLPHHQYAGSSSSSPSPHPWSTVIRPRAIPSLSLPHRVGGSNRESDTGNNYPSGRGIITVTHNRGNSSSSTQLVESLVQNAGTPSAFQHLSDAALAWIGRLNSHDATLTRMSSSSTTDNTHHRPLRASAIAEEAYNLPTYFADDSRRLRRESRNAIQHLPSGDSVRELEELLILDYSNLLASIEEEEDANLPQYEPLADGQRVTNPDLRLTETEVAACIGXEIFQTVXXQPQNIDACGICHXDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPVCKKMALTIIDLE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1078 436 MobiDBLite consensus disorder prediction 129 143 - -
Amo05g1078 436 MobiDBLite consensus disorder prediction 124 216 - -
Amo05g1078 436 MobiDBLite consensus disorder prediction 152 168 - -
Amo05g1078 436 MobiDBLite consensus disorder prediction 1 102 - -
Amo05g1078 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 430 IPR013083 -
Amo05g1078 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 45 430 IPR045191 GO:0061630
Amo05g1078 436 MobiDBLite consensus disorder prediction 186 216 - -
Amo05g1078 436 Pfam Ring finger domain 384 426 IPR001841 -
Amo05g1078 436 MobiDBLite consensus disorder prediction 48 102 - -
Amo05g1078 436 ProSiteProfiles Zinc finger RING-type profile. 385 426 IPR001841 -
Amo05g1078 436 SUPERFAMILY RING/U-box 384 431 - -
Amo05g1078 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 45 430 - -
Amo05g1078 436 SMART ring_2 385 425 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1078 Amo-Chr5 14271515 14274635 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1078 299 430 C3H Transcription Factor Family AT2G15530 29.861 9.80e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1078 - - aip:107640059 809.29