Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1075 ATGTTTTTCGAAAATGTTTCTTCTTCAGTTGCTGGCCCTAGGGATCATAGAGAGGCTTCTATCATGCTCCCAATTAACAATAATAACGCTGGTGCTGAAATAATTTACATCAGTGACGAAGAACCAGATCTTGAATCATCATTGTCAGAGGTCAACATTAATTCTGCCCCTTCAATTTTATCAACAACGGAACAAACCAATCAACATGCCTCAAATCTTTTAACATTACAAAGAAATTTGGGAATCAACACCGCCAACAACAACCACCAACAAGATGGTGTGTCACTCGATTTATCCTTACACCAGCGTATCATGCCTATGAAAAGAACTGCACCTGATTACGCTCACCGAGAGTTTACGGTGGGTGAGAGCTCAAGTGACGGTGGTGCTGCTGGTGGTTCTGTTGCTCAACCTATGGCAGCCCCCAAGCGCCGCCCCATCGCAAATGAAAATGAGGCTGTGCGCATTTCATCATCATCATCTAATACCTGCACTTGTACTCCTTCTCCCACTTGCCCTCTCCATGCTTCCACCAATAATAATATTACTTCATCTTCCAGGGAACAACGCCATGAAACTGCTAACAACAACAACAACCCCCAAAATGTTGTTCGTGTTCCTTCTAGTTTGTCGCCAATTTCTGAGATGCAACGAGCTCTTCATAGCCACCACCACCAACTCCACCATGGCCATCAACGTTATTTCTCCTCTACTGACACTTCTCCATTCCGCCCAGCCTCAATCAATCACATGGAAAATCTTCCTCATCATCAGTACGCCGGTTCTTCGTCTTCGTCTCCTTCCCCTCTTCCTTGCAGCACTGTGATTAGGCCAAGGGCTATTCCCTCTGTGTCTCTCCCTCACCGAGTTGGAGGAAGTAATAGAGAATCTGACACCGGAAACAACTATTCTTCTGGAAGGGGAATAATCACTGTGACTCACAATCGTGGAAACTCATCATCATCATCAACACAGCTAGTGGAAAGCCTTGTACAAAACGCTGGTACCCCTTCTGCATTTCAGCACCTGTCGGACGCTGCTCTTGCATGGATTGGAAGGCTGAACTCTCACGACGCGACCTTGACGAGAATGTCATCATCTTCTACCACTGATAATACTCATCACAGGCCATTGCAAGCTTCTGCTATTGCTGAGGAGGCCTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGAAGAGAGAGCCGCAGTGCCATTCAACATCTGCCTAATGGAGACTCCGTTCGACTCGAGGAGCTTTTAATCCTTGATTACTCCAACTTGCTTGCCAGCATTGAGGAGGAGGAGGATGCGAATTTGCCGCAATATGAGCCTCTGGCAGACGGGCAGCGAGTGACGAACCCTGATTTAAGACTGACGGAAACTGAGGTTGCAGCATGTATTGGGCRGGAAATTTTCCAAACTGTTGRTWAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCARRAGGACTATGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCCGTTTGCAAGAAAATGGCTCTCACCATCATAGACTTGAGG 1620 0.4623 MFFENVSSSVAGPRDHREASIMLPINNNNAGAEIIYISDEEPDLESSLSEVNINSAPSILSTTEQTNQHASNLLTLQRNLGINTANNNHQQDGVSLDLSLHQRIMPMKRTAPDYAHREFTVGESSSDGGAAGGSVAQPMAAPKRRPIANENEAVRISSSSSNTCTCTPSPTCPLHASTNNNITSSSREQRHETANNNNNPQNVVRVPSSLSPISEMQRALHSHHHQLHHGHQRYFSSTDTSPFRPASINHMENLPHHQYAGSSSSSPSPLPCSTVIRPRAIPSVSLPHRVGGSNRESDTGNNYSSGRGIITVTHNRGNSSSSSTQLVESLVQNAGTPSAFQHLSDAALAWIGRLNSHDATLTRMSSSSTTDNTHHRPLQASAIAEEAYNLPTYFADDSRRLRRESRSAIQHLPNGDSVRLEELLILDYSNLLASIEEEEDANLPQYEPLADGQRVTNPDLRLTETEVAACIGXEIFQTVXXQPQNIDACGICQXDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPVCKKMALTIIDLR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1075 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 534 IPR013083 -
Amo05g1075 540 MobiDBLite consensus disorder prediction 171 206 - -
Amo05g1075 540 MobiDBLite consensus disorder prediction 120 156 - -
Amo05g1075 540 MobiDBLite consensus disorder prediction 290 321 - -
Amo05g1075 540 SUPERFAMILY RING/U-box 488 536 - -
Amo05g1075 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 27 534 IPR045191 GO:0061630
Amo05g1075 540 Pfam Ring finger domain 488 530 IPR001841 -
Amo05g1075 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 27 534 - -
Amo05g1075 540 MobiDBLite consensus disorder prediction 256 272 - -
Amo05g1075 540 MobiDBLite consensus disorder prediction 224 321 - -
Amo05g1075 540 MobiDBLite consensus disorder prediction 233 247 - -
Amo05g1075 540 ProSiteProfiles Zinc finger RING-type profile. 489 530 IPR001841 -
Amo05g1075 540 SMART ring_2 489 529 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1075 Amo-Chr5 14179384 14183405 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1075 404 534 C3H Transcription Factor Family AT2G15530 31.034 1.34e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1075 - - aip:107640059 921.383