Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1073 ATGGAGAATCTTCCTCATCATCATCATCATCATCATCCGGGAACAATCACTGTGACTCAGAATCGTGGAAACTCATCATCATCAAGCTTATTCCCCGGTGGGTCTCCTTCAACACGGCTACTCGAAAGCCTTGTACAAAACGCCGGTACCCCTTCTTCTGGATCTGGCGCTGGTCAGAATAATACAGCAGGTACTACCGTTGGAGCTGTTCCTGCAGTTCAGCAGCTGTCGAACGTTGCTCGTGCATGGATTCGAAGGCTGAACGCTCATGACGAGGCCTTGACGAGAACGTCACAATCTTCTACCCGTGATAATACTCCTCACAGGGCACTGCGAGCTTCTCCTATTGCTGAGATCTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGACAAGAGATCCGCACTGCCATTGATCATTTGCGTAATGGAGGTTCCGTCCGACTGGAGGAACTTTTAATTCTTGATTACTCCATTGTGCTGAACTTGCTTGACAACATTGAGGAGGAGGAGGATGATGCGGATATGCCGCAGCAGTTTTATGAGTATCTGGGAGACGGGCAGCGAGTGACCAACCCCGATTTAGGACTGACGGAAACTGAGGTTGCAGTATGTATTGGACGGGAAATTTTCCGAACTGTTGGTGGGCAGCCTCAGAACATTGATGCATGCGGCATATGTCAGGAGGACTATGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTATCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCAATCTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAGGACGACGAGGACGATGATGAGTGA 858 0.4837 MENLPHHHHHHHPGTITVTQNRGNSSSSSLFPGGSPSTRLLESLVQNAGTPSSGSGAGQNNTAGTTVGAVPAVQQLSNVARAWIRRLNAHDEALTRTSQSSTRDNTPHRALRASPIAEIYNLPTYFADDSRRLRQEIRTAIDHLRNGGSVRLEELLILDYSIVLNLLDNIEEEEDDADMPQQFYEYLGDGQRVTNPDLGLTETEVAVCIGREIFRTVGGQPQNIDACGICQEDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPICKKMALTIIDLEDDEDDDE* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1073 285 Pfam Ring finger domain 226 268 IPR001841 -
Amo05g1073 285 CDD RING-H2_TTC3 227 268 - -
Amo05g1073 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 7 272 - -
Amo05g1073 285 MobiDBLite consensus disorder prediction 16 38 - -
Amo05g1073 285 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Amo05g1073 285 SUPERFAMILY RING/U-box 226 275 - -
Amo05g1073 285 MobiDBLite consensus disorder prediction 1 38 - -
Amo05g1073 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 272 IPR013083 -
Amo05g1073 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 272 IPR045191 GO:0061630
Amo05g1073 285 SMART ring_2 227 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1073 Amo-Chr5 14091701 14094552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1073 136 272 C3H Transcription Factor Family AT2G15530 35.616 8.06e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1073 - - adu:110280903 491.886