Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1071 ATGGGAGATCATATGTACAACTATGACAAGAATCTGTCATCGTCCTCTTCTTCACAGGACGAAATCTCTCTTTTCCTGCGTCAGATTTTGCTGCGTTCCTCACAACCTCACCAAGATTCACCACCACCGCCACAACAACAACAACAACAACAACTCCCTTCTTCTTCTTCCTCTTCTTGTTTCCCATCAACCTCACAGCTTCAAGATGGGAAGATCTCTGCACTTGGTTCCACCCCTGCTGGTTTTCTCTCTGCCTCCTCCATGAAGGGGCACGGAGGTAATTCTGCACCAAATGTCTCTTCTTCTTCCGTAGGACTCAGTGCCAACGATACTGATGACTATGATTGCGAAAGTGAGGAGGGTGTTGAGGCCTTGGCAGAAGATGTTCCAGCAAAGCCTGTACCTTCTAGGAGTTCATCAAAGAGGAGCAGAGCAGCAGAAGTTCATAATTTGTCAGAAAAGAGAAGGAGGAGTAGGATCAATGAAAAGATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAACAAGGTAACTCTAGAGTTTCTTTCATCCTTTGGTTTTAAATGGTGCACTTCATGA 579 0.4491 MGDHMYNYDKNLSSSSSSQDEISLFLRQILLRSSQPHQDSPPPPQQQQQQQLPSSSSSSCFPSTSQLQDGKISALGSTPAGFLSASSMKGHGGNSAPNVSSSSVGLSANDTDDYDCESEEGVEALAEDVPAKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKVTLEFLSSFGFKWCTS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1071 192 MobiDBLite consensus disorder prediction 28 156 - -
Amo05g1071 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 192 IPR011598 GO:0046983
Amo05g1071 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 176 IPR036638 GO:0046983
Amo05g1071 192 Pfam Helix-loop-helix DNA-binding domain 148 174 IPR011598 GO:0046983
Amo05g1071 192 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 13 176 IPR031066 -
Amo05g1071 192 MobiDBLite consensus disorder prediction 142 156 - -
Amo05g1071 192 MobiDBLite consensus disorder prediction 49 109 - -
Amo05g1071 192 PANTHER TRANSCRIPTION FACTOR SPATULA 13 176 - -
Amo05g1071 192 Gene3D - 139 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1071 Amo-Chr5 14037715 14038740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1071 109 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 67.606 2.64e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g1071 HLH 6.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1071 - - gmx:100793754 177.178