Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1070 ATGTTGCAGACTGATAAGGCTTCAATGCTGGATGAGGCTATTGAATATCTTAAACAGCTTCAGCTCCAAGTACAGATGTTATCGATGAGAAATGGATTGAGTTTGCACCCTATGAGCTTTCCCGAAGGATTGCAGCCTCTACAGTTCTCAAGAATGAGTATGGAGTTTAGTGAAGAAAACAGGGCCATCCCTGTAAACATGACAGAAAGTCTGCCTCTGCACCAAGGCAACCCCTTGCACTATGCATCCCTACCTAACAAACCAACCATGCCAAATCAGCCATCAGTGACTTACCCTTCATATCTTAACAACTCAGAAGCGCCTTTTGGGCTGGAACCGCCAATCCTAGCACATATAAAACACCTTCAACCAGGAAGATTTTCTGAGGCGCATAGGGAAGACACACTGCAGCAGCAGCAATCAAATGCAAGCCATTCAGATACCGATCCATTAGGTGGTTCTCAAGCTGTAAAAGAGTTGGAGACAGGAACCATGCCCACAACATCACTCTCCTTTGACCTGCAAACATGTGAACCTAAGGACAACAACCCTTTGCAAATTTGCATTGCTGGAAGAGATCAATCATCATCAGTGATCATTAGAAATAGTTAA 612 0.4412 MLQTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMSFPEGLQPLQFSRMSMEFSEENRAIPVNMTESLPLHQGNPLHYASLPNKPTMPNQPSVTYPSYLNNSEAPFGLEPPILAHIKHLQPGRFSEAHREDTLQQQQSNASHSDTDPLGGSQAVKELETGTMPTTSLSFDLQTCEPKDNNPLQICIAGRDQSSSVIIRNS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1070 203 MobiDBLite consensus disorder prediction 134 151 - -
Amo05g1070 203 PANTHER TRANSCRIPTION FACTOR SPATULA 4 147 - -
Amo05g1070 203 MobiDBLite consensus disorder prediction 127 154 - -
Amo05g1070 203 Coils Coil 10 30 - -
Amo05g1070 203 Gene3D - 2 36 IPR036638 GO:0046983
Amo05g1070 203 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 4 147 IPR031066 -
Amo05g1070 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 39 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1070 Amo-Chr5 14035958 14037689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1070 3 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 39.506 6.93e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1070 - - gmx:100793754 242.276