Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1068 ATGTCAGACGAAGAAGCTGCTGCAACTACCGCCGCCGGTAGGAGAAGGACCAGAGGTACCGCTTCCTCCGCCCGCAGCGAGGCCCTAGAGCGTCTCAAAGCCCGTGTCCGCGGCGGGCCCCAGATCAGGCTCGAAAACCCTATCTACGATACTGTCGAGGAAGAAGAGTACAACGCCCTTGTCGCCAAGCGCCGCGAGCAGGCCCGTGCCTTCATCGTTGACGACGATGGCCTTGGCTACGGCGATGAGGGGGAGGAAGAGGACTGGTCTAAGGAAGGCGTCTCTCTCTCCTCTGACGAATCCGATGGCGCCGAAAATGAAGCCAGGCCAAAGCGGAAGAAGCTTGAAAAGAAAGAACATAATCCCAACCAGAAACGCACATCGGCTGCACTTTCCGCCGCCGCTGTTGGCGCCCAGCGGCTATCCTCGATGTTCACCTCATCGCTGTTCAAGAAGAGCAGGGACGACAAGGCCCCCGACAGCATCGTTGACGATGTTCTGGCGGAGTTTGCAGCCGACGAGACCGATAGGGAACGGCGGAGAAGAATCCATCCGAAAGCCATTCCCAATTCGAATTCAAATTCGTCCTCTGCTACAAACGATGCTCTGCGGATTAATCGCGATTTCGTTAGCAATTCGTCAATTGTTGGAGCATCTGATTTGATGAGAGGTTCTTCGTTGCTCGACACTGCTGTAAATTGTGATGTTGAGTCCGTTAGAGTTGTTAGCAATGACGTCAGTGATTTAGGTTCAGAGCAGAAGAAATGCGAGGCAGTTAAAGAAAACGAGCTTTCAATTGAATGCTCGGATAATGAGAAAATTTGTAGTTCTGAGAATGGTGATGCATCAATTGAGCAAGTTCCGAGTAATGTTAATGTTTGTAAGGAGGAAGTTGTGAAGGACTCTAAGGCAGAGGAAAAACCTGTTGCTGTGAAAAAGGAGTTGTTTACTTTGAATGCAAAGCTTAAGGAAGAAAAAGAGGACCCTGCGTTGAGTGCTACTGCGGGTTGGCAAGCAGTGAGGAATGGTGGTGCAGCGAATGCAAATGTTGGGGATTCGAAAGCATTGAGAGAGGCTTTGCATAAGGAAGAACACTCGGAGTTCAATCTGGAGGAAGATGGTTCGCTACCTTTCTACATACTGGATGCCTATGAGGAGTTTAATGGAGCGAACAGGGGAACACTTTATTTATTTGGGAAGGTTAAAGCCGGGAATTCGTATCAGAGTTGTTGTGTTGTTGTGAAGAACATGCAAAGATGTGTCTATGCCATTCCAAGTCACCCTATACATCTTACTGATGAAATGGTGAAACTTGAGAAAGATGCTAAAAAATCTGCAGATTTCCATAAAAAGCTGCAAGATGCAGTATCTGGTTTAAAGAACGAGTTAGCAAAACATCTTCTGAACTTGAATGTTTCATGCTTTAGTATGGCTCCTGTTAAGAGGAAGTATGCATTTGAAAGGTTCGAAATTCCTTCTGGTGAAAGTTATGTGCTTAAAATCAGTTATCCATTCAAGGATCAAGTACTTCCTGCGGACCTGAAAGGAGAAAGTTTCTCTGGTCTTTTAGGAACTCATTACAGTGCTCTGGAGCTTTTTCTGGTTAAAAGAAAGATTAAGGGACCTTCGTGGCTACAGGTTTCGAACTTTTCAAACTGCCCAACTTCTGAGAGGGAAAGATTTGTAAGTTGTGCATCCACTACAAGTAGTGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCCCCTAAAGACATCAGGGTTTCAACTTCATCAAAAATCAGTTTTGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACAACCATAAATGAAAAACAGAACGTAAATGAGATTGTATCTGCATCTATAGTCTGCTGCAATATGGTTAAGATTGACACACCTATGTTGGCTTCAGAATGGAAGAGACCTGGAATGCTTACCCATTTTACTGTCATTCGTAAAATTGATGGGAATATATTTCCACTGGGGTTCAGCAAGGAGGTTACAGAGAGAAACTCAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGCTGAATCGCCTGATGACAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGGCATAATATATCTGGATTTGACCTGGAGGTACTCCTCCATAGATCCCAGGCGTGCAAAGTACCAAGCAACATGTGGTCTAAACTAGGCCGCCTCAAGCGTTCTGCATTGCCTAGGCTTGATAGAGGAAGCAAGGCATTTGGTTCTGGAGCTCGTCCTGCTGTCATGTCTTGTATGTCTGGCCGGCTTCTTTGTGATACATTCTTGTGTTCCCGTGATCTGCTCAAAGAGGTCAGTTATTCATTAACTGAACTCACAAAAACGCAGCTGAAGAAGTTTAGGAAGGAAGTTGCTCCACATGATGTTCCAAAGAAGTTCCAATCAGCTGAATCCCTAATTGAGCTTATTGAATGTAGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTCACCCGCCAGCTGACTAATATTAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAGTTTCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATGGTGCCAGACAAAATTCCAAACTATGCAAAAGAAACAACATTGACGAAACGCAAAGTAGCTCATGGTGTTGAGGATAGCAACTTAGAAGAAGCAGATGGTAACGAGGCAAACTATGATAATGATGCTGCCGATACTGATAATAAGAAAAGCAAAAAGGCTCCTTCTTATGCTGGAGGTCTGGTATTAGAGCCAAAGAAGGGACTATATGACAAATATATACTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATATAATATATGCTTTACCACTGTTGAAAGATCTCAAGGTGCATCATTTTCCCGTTTACCATCCAGTCTAGAAACTGGGGTCTTGCCGGAGCTGTTGAAAAATCTGGTTGAAAGGAGGAGATTGGTAAAAAAGTGGATGAAGAAAGCATCTGGTCTTAAAGTGCAGCAACTGGACATTCAGCAGCAAGCATTGAAGCTTACTGCAAACAGTATGTATGGATGCCTAGGATTTTCCAATTCAAGATTTTATGCAAAGCCAATTGCCGAACTTATAACCCTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTCATATATGGTGATACTGATTCAATAATGATATACAGTGGTCTAGATGATATTGCAAAAGCAAAAGCAATGGCTTCAAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTACTTAAGAAAAAGAAATATGCAGCTGTTAAAGTGCAGTTCAACGATGATACTCCATATGAGGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGGGATTGGAGCTTATTAGCTAAAGAATTGGGTGATTTTTGCTTGACTCAAATTTTGTCAGGAGGATCATGTGAAGATGTTGTTGAATCAATTCACAGTTATCTCATGCAGGAGCAAGAAAAAATGAGGAGTGGACAAGTACCATTGGAGAAATATGTCATCAATAAAACATTGACTAAACCTCCGGAGGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGAATGAAGCAACAAGGTTACTCCTCTGGTTGTTCTGTTGGTGATACAATCCCTTACATAATTTGCTATGAAGAGGGCTGTAGTTCAGGTAGTGCAACAGGTATTGCTCAGCGCGCAAGGCATCCCGATGAACTAAAACAAGAGCAAGGGAAATGGCTTATTGACATTGAGTACTATTTGTCACAACAGATTCATCCAGTGGTATCACGTCTTTGTGCATCAATCCAGGGCACAAGCCCAGAAAGACTGGCTGACTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTCCAAGTAGTGATCCTACAAGCTCACTTTTATTCGCTTCTGATGACGAAGAAAGGTACAGGGGATGTGAGCCACTCGTATTGTGTTGCCCCAGCTGCTCTGATTCTTTTGACTGCCCACCTGTTTTTAAGTCAATTTGTTTGTTGGGAAGTGAAAAGATAACCAGCTCAGGCACGGAGGAATCCAGTTACAATTTCTGGCATAAACTGCGTTGTTCCAAATGCCTGGAAGATGGTGTTGGAAGAATATCTCCTGCAATGCTAACCAATCAGGTCAAAATGCAAACAGAGAAGTTTGTTTTAATGTACTACAGAGGTGTACTGATGTGTGATGATGAAACGTGTAAGCATACGACACGCAGTATCAACCTTAAGTTGGTGGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGATGCAACGGCCGTCTCCACAGAAAGTACACCGAGGCAGACTTGTACAAGCAGCTCTCGTATTTCTGCCATGTGTTGAATACTTTTTGCAGTATGGAGAAGATGGAGGCTAAATCTAGGATGCTAATTGAGAAAGAGTTGATGAAGATTAGACCAATGGTTGATCTAGCAGCATCCACGGTACAGAAGTTAAGAGACCGTTGTGCCTACGGTTGGGTGAATTTGCAGGACTTTGTTGTTCCTGTTTAA 4710 0.4329 MSDEEAAATTAAGRRRTRGTASSARSEALERLKARVRGGPQIRLENPIYDTVEEEEYNALVAKRREQARAFIVDDDGLGYGDEGEEEDWSKEGVSLSSDESDGAENEARPKRKKLEKKEHNPNQKRTSAALSAAAVGAQRLSSMFTSSLFKKSRDDKAPDSIVDDVLAEFAADETDRERRRRIHPKAIPNSNSNSSSATNDALRINRDFVSNSSIVGASDLMRGSSLLDTAVNCDVESVRVVSNDVSDLGSEQKKCEAVKENELSIECSDNEKICSSENGDASIEQVPSNVNVCKEEVVKDSKAEEKPVAVKKELFTLNAKLKEEKEDPALSATAGWQAVRNGGAANANVGDSKALREALHKEEHSEFNLEEDGSLPFYILDAYEEFNGANRGTLYLFGKVKAGNSYQSCCVVVKNMQRCVYAIPSHPIHLTDEMVKLEKDAKKSADFHKKLQDAVSGLKNELAKHLLNLNVSCFSMAPVKRKYAFERFEIPSGESYVLKISYPFKDQVLPADLKGESFSGLLGTHYSALELFLVKRKIKGPSWLQVSNFSNCPTSERERFVSCASTTSSVSWCKFEVIVDSPKDIRVSTSSKISFEIPPVVVTAINLKTTINEKQNVNEIVSASIVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKIDGNIFPLGFSKEVTERNSKAGSNVLCVESSERALLNRLMTELHKLDSDVLVGHNISGFDLEVLLHRSQACKVPSNMWSKLGRLKRSALPRLDRGSKAFGSGARPAVMSCMSGRLLCDTFLCSRDLLKEVSYSLTELTKTQLKKFRKEVAPHDVPKKFQSAESLIELIECSETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEFLLLHAFHAKKYMVPDKIPNYAKETTLTKRKVAHGVEDSNLEEADGNEANYDNDAADTDNKKSKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSQGASFSRLPSSLETGVLPELLKNLVERRRLVKKWMKKASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMASKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFNDDTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSYLMQEQEKMRSGQVPLEKYVINKTLTKPPEAYPDAKNQPHVLVAQRMKQQGYSSGCSVGDTIPYIICYEEGCSSGSATGIAQRARHPDELKQEQGKWLIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEAPSSDPTSSLLFASDDEERYRGCEPLVLCCPSCSDSFDCPPVFKSICLLGSEKITSSGTEESSYNFWHKLRCSKCLEDGVGRISPAMLTNQVKMQTEKFVLMYYRGVLMCDDETCKHTTRSINLKLVGDSERGTVCPNYPRCNGRLHRKYTEADLYKQLSYFCHVLNTFCSMEKMEAKSRMLIEKELMKIRPMVDLAASTVQKLRDRCAYGWVNLQDFVVPV* 1570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1068 1569 Pfam DNA polymerase alpha subunit p180 N terminal 35 89 IPR024647 -
Amo05g1068 1569 Gene3D - 599 913 IPR036397 GO:0003676
Amo05g1068 1569 Coils Coil 1115 1135 - -
Amo05g1068 1569 Gene3D - 1165 1350 IPR042087 -
Amo05g1068 1569 PRINTS DNA-directed DNA-polymerase family B signature 1034 1046 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo05g1068 1569 PRINTS DNA-directed DNA-polymerase family B signature 958 971 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo05g1068 1569 PRINTS DNA-directed DNA-polymerase family B signature 1087 1095 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo05g1068 1569 MobiDBLite consensus disorder prediction 75 133 - -
Amo05g1068 1569 MobiDBLite consensus disorder prediction 177 199 - -
Amo05g1068 1569 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1567 - -
Amo05g1068 1569 MobiDBLite consensus disorder prediction 1 28 - -
Amo05g1068 1569 Pfam DNA polymerase family B 858 1321 IPR006134 GO:0000166|GO:0003677
Amo05g1068 1569 Gene3D Helix hairpin bin 997 1048 - -
Amo05g1068 1569 SUPERFAMILY Ribonuclease H-like 372 887 IPR012337 -
Amo05g1068 1569 Coils Coil 449 469 - -
Amo05g1068 1569 ProSitePatterns DNA polymerase family B signature. 1089 1097 IPR017964 GO:0000166|GO:0003676
Amo05g1068 1569 CDD DNA_polB_alpha_exo 599 850 - -
Amo05g1068 1569 SUPERFAMILY DNA/RNA polymerases 934 1337 IPR043502 -
Amo05g1068 1569 TIGRFAM pol2: DNA polymerase (pol2) 48 1319 - -
Amo05g1068 1569 Gene3D - 378 585 - -
Amo05g1068 1569 Gene3D - 418 540 - -
Amo05g1068 1569 Pfam DNA Polymerase alpha zinc finger 1362 1565 IPR015088 GO:0003887|GO:0006260
Amo05g1068 1569 SMART polmehr3 599 1101 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo05g1068 1569 Pfam DNA polymerase family B, exonuclease domain 407 793 IPR006133 -
Amo05g1068 1569 Gene3D DNA Polymerase alpha, zinc finger 1361 1554 IPR038256 -
Amo05g1068 1569 Gene3D Palm domain of DNA polymerase 927 1151 IPR023211 -
Amo05g1068 1569 CDD POLBc_alpha 934 1337 IPR045846 GO:0003887|GO:1902975
Amo05g1068 1569 MobiDBLite consensus disorder prediction 906 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1068 Amo-Chr5 13992714 14004386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1068 9 1567 Core DNA Replication Machinery Family AT5G67100 59.255 0.0 1813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1068 K02320 - gmx:100798779 2098.94