Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1060 ATGGATGTGGACATATTCAAAACCTCTACTGCTAGTGACAGCATGGACATGATGGCAATGATGATGCAGCAGATGGAAAAGCTTCCTCCTCCTGAATTATCTGAACCTCCTTTTTATACCACCTACCCATCACAAACCGACTTCCATAATAACAATAATGTTGAACCAAACTTGATTAATCCCACTTTCATCTTCCAACAACAACATTCCATGGCACCACCACCTGTAGTCACCAGCAACAACGATGATATTATTACTTCTTCTTTTCCCTACCCTCCTCCTCCTCCTCCTCCTTCTTGTTCCGATAGCAGCAACAAGAAGAACTCGATGGCTGCCATGAGGGAGATGATATTCCGGGTGGCGGTTATGCAACCGGTTCACATAGACCCGGAGTCTATAAAGCCACCAAAGAGGAGGAACGTGAAGATCTCAAAGGATCCTCAGAGCGTGGCGGCGAGGCACAGGAGGGAGCGGATAAGCGAGAGGATAAGGATTCTTCAGAGATTAGTCCCCGGTGGAACTAAAATGGACACAGCTTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTCTTGAAGAAGCAAGTGCAGACTCTCGAACAAGCAGGAGGGGGAAGAACATGTAATAATAATGGCTTCACGGGATTCTCATCATCATCATCATCCATTAATGCCAGTAATTATCCTGCTATGGTTAAAGGTTGCCACCAACCTTATCCTCCCATGCTGATGGGTTCTTCTGCTTCAAAACAATTGCTCAGCTGA 765 0.4588 MDVDIFKTSTASDSMDMMAMMMQQMEKLPPPELSEPPFYTTYPSQTDFHNNNNVEPNLINPTFIFQQQHSMAPPPVVTSNNDDIITSSFPYPPPPPPPSCSDSSNKKNSMAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGGGRTCNNNGFTGFSSSSSSINASNYPAMVKGCHQPYPPMLMGSSASKQLLS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1060 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Amo05g1060 254 MobiDBLite consensus disorder prediction 79 108 - -
Amo05g1060 254 Pfam Helix-loop-helix DNA-binding domain 153 192 IPR011598 GO:0046983
Amo05g1060 254 Gene3D - 142 206 IPR036638 GO:0046983
Amo05g1060 254 Coils Coil 182 202 - -
Amo05g1060 254 CDD bHLH_AtIND_like 144 200 - -
Amo05g1060 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 201 IPR036638 GO:0046983
Amo05g1060 254 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 238 IPR045843 GO:0003700|GO:0006355
Amo05g1060 254 SMART finulus 149 198 IPR011598 GO:0046983
Amo05g1060 254 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1060 Amo-Chr5 13873796 13874908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1060 17 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.767 9.33e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g1060 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1060 - - gmx:100796649 218.394