Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1057 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGACACTGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGATCAACTGGACGATCTCGTGGATTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGATGTTCTATCAGGTGAACATGTTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTCGAGAGTTTGATGGCAGAAACCCATGAACTGGGAGGTTCTACCGTGGTGGTTGATCGAGCTACACCCAAGGATGATGACTTCAAGCCAGCAGGCAGAATGCCACAGGGAGGGTATGGTGCATATAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTACGGAAGGGGAGAGCCATCTCGTGGAATTGGTAAAAAGATTTTTGTTGGCCGACTTCCCCCAGAGGCAACTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTACGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGCCTCATGAAATTTGTGGACAACAGGTAGCATTAGATTCAGCCACACCTGTTGATGATGCAAGTCCGAGTGAGAATTTTATGATGAATGGCGTGGGTTCTTTTGGGGGTTATGGAGGTCCTATGCGAACTTATGGGAGGATGTATGGTAGCCTGGACTTCGATGATTGGGGTTATGGAATTCCCAGTGGGAGGCCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1080 0.45 MEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKDDDFKPAGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRPHEICGQQVALDSATPVDDASPSENFMMNGVGSFGGYGGPMRTYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1057 359 PANTHER OS01G0945800 PROTEIN 3 359 - -
Amo05g1057 359 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Amo05g1057 359 SMART rrm1_1 225 296 IPR000504 GO:0003723
Amo05g1057 359 SMART rrm1_1 93 164 IPR000504 GO:0003723
Amo05g1057 359 SMART rrm1_1 5 76 IPR000504 GO:0003723
Amo05g1057 359 Gene3D - 84 174 IPR012677 -
Amo05g1057 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 279 IPR000504 GO:0003723
Amo05g1057 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Amo05g1057 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Amo05g1057 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Amo05g1057 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Amo05g1057 359 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Amo05g1057 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 359 - -
Amo05g1057 359 SUPERFAMILY RNA-binding domain, RBD 224 324 IPR035979 GO:0003676
Amo05g1057 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Amo05g1057 359 Gene3D - 223 304 IPR012677 -
Amo05g1057 359 Gene3D - 1 83 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1057 Amo-Chr5 13843994 13848588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1057 5 86 Eukaryotic Initiation Factors Gene Family AT2G23350 35.714 3.65e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1057 K14411 - gmx:100795240 671.774